Literature DB >> 12972632

A genomewide screen in Saccharomyces cerevisiae for genes that suppress the accumulation of mutations.

Meng-Er Huang1, Anne-Gaelle Rio, Alain Nicolas, Richard D Kolodner.   

Abstract

A genomewide screen of a collection of 4,847 yeast gene deletion mutants was carried out to identify the genes required for suppressing mutations in the CAN1 forward-mutation assay. The primary screens and subsequent analysis allowed (i) identification of 18 known mutator mutants, providing a solid means for checking the efficiency of the screen, and (ii) identification of a number of genes not known previously to be involved in suppressing mutations. Among the previously uncharacterized mutation-suppressing genes were six genes of unknown function including four (CSM2, SHU2, SHU1, and YLR376c) encoding proteins that interact with each other and promote resistance to killing by methyl methanesulfonate, one gene (EGL1) previously identified as suppressing Ty1 mobility and recombination between repeated sequences, and one gene (YLR154c) that was not associated with any known processes. In addition, five genes (TSA1, SOD1, LYS7, SKN7, and YAP1) implicated in the oxidative-stress responses were found to play a significant role in mutation suppression. Furthermore, TSA1, which encodes thioredoxin peroxidase, was found to strongly suppress gross chromosomal rearrangements. These results provide a global view of the nonessential genes involved in preventing mutagenesis. Study of such genes should provide useful clues in identification of human genes potentially involved in cancer predisposition and in understanding their mechanisms of action.

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Year:  2003        PMID: 12972632      PMCID: PMC208792          DOI: 10.1073/pnas.2035018100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae.

Authors:  K Myung; C Chen; R D Kolodner
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

2.  Identification and characterization of Saccharomyces cerevisiae EXO1, a gene encoding an exonuclease that interacts with MSH2.

Authors:  D X Tishkoff; A L Boerger; P Bertrand; N Filosi; G M Gaida; M F Kane; R D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-08       Impact factor: 11.205

3.  A genome-wide screen for methyl methanesulfonate-sensitive mutants reveals genes required for S phase progression in the presence of DNA damage.

Authors:  Michael Chang; Mohammed Bellaoui; Charles Boone; Grant W Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-13       Impact factor: 11.205

Review 4.  Oxidative damage to DNA: formation, measurement, and biological significance.

Authors:  J Cadet; M Berger; T Douki; J L Ravanat
Journal:  Rev Physiol Biochem Pharmacol       Date:  1997       Impact factor: 5.545

5.  The distribution of the numbers of mutants in bacterial populations.

Authors:  D E LEA; C A COULSON
Journal:  J Genet       Date:  1949-12       Impact factor: 1.166

6.  Repair of chromosome ends after telomere loss in Saccharomyces.

Authors:  J L Mangahas; M K Alexander; L L Sandell; V A Zakian
Journal:  Mol Biol Cell       Date:  2001-12       Impact factor: 4.138

7.  The Skn7 response regulator controls gene expression in the oxidative stress response of the budding yeast Saccharomyces cerevisiae.

Authors:  B A Morgan; G R Banks; W M Toone; D Raitt; S Kuge; L H Johnston
Journal:  EMBO J       Date:  1997-03-03       Impact factor: 11.598

8.  A comprehensive two-hybrid analysis to explore the yeast protein interactome.

Authors:  T Ito; T Chiba; R Ozawa; M Yoshida; M Hattori; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

Review 9.  Identification of mismatch repair genes and their role in the development of cancer.

Authors:  R Fishel; R D Kolodner
Journal:  Curr Opin Genet Dev       Date:  1995-06       Impact factor: 5.578

10.  The Saccharomyces cerevisiae MLH3 gene functions in MSH3-dependent suppression of frameshift mutations.

Authors:  H Flores-Rozas; R D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

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  149 in total

1.  Mutator genes for suppression of gross chromosomal rearrangements identified by a genome-wide screening in Saccharomyces cerevisiae.

Authors:  Stephanie Smith; Ji-Young Hwang; Soma Banerjee; Anju Majeed; Amitabha Gupta; Kyungjaem Myung
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

Review 2.  Mechanisms of resistance to oxidative and nitrosative stress: implications for fungal survival in mammalian hosts.

Authors:  Tricia A Missall; Jennifer K Lodge; Joan E McEwen
Journal:  Eukaryot Cell       Date:  2004-08

3.  Chromosome healing through terminal deletions generated by de novo telomere additions in Saccharomyces cerevisiae.

Authors:  Christopher D Putnam; Vincent Pennaneach; Richard D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-24       Impact factor: 11.205

4.  Endogenous DNA replication stress results in expansion of dNTP pools and a mutator phenotype.

Authors:  Marta B Davidson; Yuki Katou; Andrea Keszthelyi; Tina L Sing; Tian Xia; Jiongwen Ou; Jessica A Vaisica; Neroshan Thevakumaran; Lisette Marjavaara; Chad L Myers; Andrei Chabes; Katsuhiko Shirahige; Grant W Brown
Journal:  EMBO J       Date:  2012-01-10       Impact factor: 11.598

5.  Peroxiredoxin chaperone activity is critical for protein homeostasis in zinc-deficient yeast.

Authors:  Colin W MacDiarmid; Janet Taggart; Kittikhun Kerdsomboon; Michael Kubisiak; Supawee Panascharoen; Katherine Schelble; David J Eide
Journal:  J Biol Chem       Date:  2013-09-10       Impact factor: 5.157

6.  Crystallization and preliminary X-ray analysis of a decameric form of cytosolic thioredoxin peroxidase 1 (Tsa1), C47S mutant, from Saccharomyces cerevisiae.

Authors:  Marcos Antonio de Oliveira; Victor Genu; Karen Fulan Discola; Simone Vidigal Alves; Luis Eduardo Soares Netto; Beatriz Gomes Guimarães
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-07-07

7.  Mitotic checkpoint function in the formation of gross chromosomal rearrangements in Saccharomyces cerevisiae.

Authors:  Kyungjae Myung; Stephanie Smith; Richard D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-28       Impact factor: 11.205

8.  Suppression of gross chromosomal rearrangements by yKu70-yKu80 heterodimer through DNA damage checkpoints.

Authors:  Soma Banerjee; Stephanie Smith; Kyungjae Myung
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

9.  Thioredoxin and Glutaredoxin Systems Required for Oxidative Stress Resistance, Fungicide Sensitivity, and Virulence of Alternaria alternata.

Authors:  Haijie Ma; Mingshuang Wang; Yunpeng Gai; Huilan Fu; Bin Zhang; Ruoxin Ruan; Kuang-Ren Chung; Hongye Li
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

10.  A genetic screen for increased loss of heterozygosity in Saccharomyces cerevisiae.

Authors:  Marguerite P Andersen; Zara W Nelson; Elizabeth D Hetrick; Daniel E Gottschling
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

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