Literature DB >> 12971727

Nuclear microenvironments support physiological control of gene expression.

Gary S Stein1, Jane B Lian, Martin Montecino, Janet L Stein, André J van Wijnen, Amjad Javed, Jitesh Pratap, Je Choi, S Kaleem Zaidi, Soraya Gutierrez, Kimberly Harrington, Jiali Shen, Daniel Young, Shirwin Pockwinse.   

Abstract

There is growing recognition that the organization of nucleic acids and regulatory proteins is functionally linked to the assembly, localization and activity of gene regulatory machinery. Cellular, molecular, biochemical and in-vivo genetic evidence support an obligatory relationship between nuclear microenvironments where regulatory complexes reside and fidelity of transcriptional control. Perturbations in mechanisms governing the intranuclear trafficking of transcription factors and the temporal/spatial organization of regulatory proteins within the nucleus occur with compromised gene expression that abrogates skeletal development and mediates leukemogenesis.

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Year:  2003        PMID: 12971727     DOI: 10.1023/a:1024943214431

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  103 in total

1.  CCAAT/enhancer-binding proteins (C/EBP) beta and delta activate osteocalcin gene transcription and synergize with Runx2 at the C/EBP element to regulate bone-specific expression.

Authors:  Soraya Gutierrez; Amjad Javed; Daniel K Tennant; Monique van Rees; Martin Montecino; Gary S Stein; Janet L Stein; Jane B Lian
Journal:  J Biol Chem       Date:  2001-10-19       Impact factor: 5.157

2.  A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation.

Authors:  P A Grant; D Schieltz; M G Pray-Grant; D J Steger; J C Reese; J R Yates; J L Workman
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

Review 3.  Covalent modifications of histones: expression from chromatin templates.

Authors:  J R Davie
Journal:  Curr Opin Genet Dev       Date:  1998-04       Impact factor: 5.578

4.  CCAAT enhancer-binding protein (C/EBP) and AML1 (CBF alpha2) synergistically activate the macrophage colony-stimulating factor receptor promoter.

Authors:  D E Zhang; C J Hetherington; S Meyers; K L Rhoades; C J Larson; H M Chen; S W Hiebert; D G Tenen
Journal:  Mol Cell Biol       Date:  1996-03       Impact factor: 4.272

5.  Chromatin hyperacetylation abrogates vitamin D-mediated transcriptional upregulation of the tissue-specific osteocalcin gene in vivo.

Authors:  M Montecino; B Frenkel; A J van Wijnen; J B Lian; G S Stein; J L Stein
Journal:  Biochemistry       Date:  1999-01-26       Impact factor: 3.162

6.  Targeted disruption of Cbfa1 results in a complete lack of bone formation owing to maturational arrest of osteoblasts.

Authors:  T Komori; H Yagi; S Nomura; A Yamaguchi; K Sasaki; K Deguchi; Y Shimizu; R T Bronson; Y H Gao; M Inada; M Sato; R Okamoto; Y Kitamura; S Yoshiki; T Kishimoto
Journal:  Cell       Date:  1997-05-30       Impact factor: 41.582

7.  Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors.

Authors:  L C Mahadevan; A C Willis; M J Barratt
Journal:  Cell       Date:  1991-05-31       Impact factor: 41.582

8.  A RUNX2/PEBP2alpha A/CBFA1 mutation displaying impaired transactivation and Smad interaction in cleidocranial dysplasia.

Authors:  Y W Zhang; N Yasui; K Ito; G Huang; M Fujii; J Hanai; H Nogami; T Ochi; K Miyazono; Y Ito
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

9.  Moderate increase in histone acetylation activates the mouse mammary tumor virus promoter and remodels its nucleosome structure.

Authors:  J Bartsch; M Truss; J Bode; M Beato
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

10.  Preliminary crystallographic study of glutathione S-transferase fused with the nuclear matrix targeting signal of the transcription factor AML-1/CBF-alpha2.

Authors:  L Tang; B Guo; A J van Wijnen; J B Lian; J L Stein; G S Stein; G W Zhou
Journal:  J Struct Biol       Date:  1998-09       Impact factor: 2.867

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  5 in total

1.  The pattern of chromosome folding in interphase is outlined by the linear gene density profile.

Authors:  Alexander M Boutanaev; Lyudmila M Mikhaylova; Dmitry I Nurminsky
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

2.  Evidence of spatially bound gene regulation in Mus musculus: decreased gene expression proximal to microRNA genomic location.

Authors:  Hidenori Inaoka; Yutaka Fukuoka; Isaac S Kohane
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

Review 3.  Nuclear organization mediates cancer-compromised genetic and epigenetic control.

Authors:  Sayyed K Zaidi; Andrew J Fritz; Kirsten M Tracy; Jonathan A Gordon; Coralee E Tye; Joseph Boyd; Andre J Van Wijnen; Jeffrey A Nickerson; Antony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Adv Biol Regul       Date:  2018-05-09

4.  Matrin 3 is a co-factor for HIV-1 Rev in regulating post-transcriptional viral gene expression.

Authors:  Venkat S R K Yedavalli; Kuan-Teh Jeang
Journal:  Retrovirology       Date:  2011-07-20       Impact factor: 4.602

5.  Chromosomal clustering of a human transcriptome reveals regulatory background.

Authors:  Jan H Vogel; Anja von Heydebreck; Antje Purmann; Silke Sperling
Journal:  BMC Bioinformatics       Date:  2005-09-19       Impact factor: 3.169

  5 in total

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