Literature DB >> 12971717

Is DNA sequence sufficient to specify DNA replication origins in metazoan cells?

Giuseppe Biamonti1, Sónia Paixão, Alessandra Montecucco, Fiorenzo Antonio Peverali, Silvano Riva, Arturo Falaschi.   

Abstract

DNA replication occupies a central position in the cell cycle and, therefore, in the development and life of multicellular organisms. During the last 10 years, our comprehension of this important process has considerably improved. Although the mechanisms that coordinate DNA replication with the other moments of the cell cycle are not yet fully understood, it is known that they mainly operate through DNA replication origins and the protein complexes bound to them. In eukaryotes, the packaging status of chromatin seems to be part of the mechanism that controls whether or not and when during the S-phase a particular origin will be activated. Intriguingly, the protein complexes bound to DNA replication origins appear to be directly involved in controlling chromatin packaging. In this manner they can also affect gene expression. In this review we focus on DNA replication origins in metazoan cells and on the relationship between these elements and the structural and functional organization of the genome.

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Year:  2003        PMID: 12971717     DOI: 10.1023/a:1024910307162

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   4.620


  51 in total

1.  Visualization of DNA replication on individual Epstein-Barr virus episomes.

Authors:  P Norio; C L Schildkraut
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

2.  Stability, chromatin association and functional activity of mammalian pre-replication complex proteins during the cell cycle.

Authors:  Y Okuno; A J McNairn; N den Elzen; J Pines; D M Gilbert
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

Review 3.  DNA replication in eukaryotic cells.

Authors:  Stephen P Bell; Anindya Dutta
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

4.  Noc3p, a bHLH protein, plays an integral role in the initiation of DNA replication in budding yeast.

Authors:  Yuexuan Zhang; Zhiling Yu; Xinrong Fu; Chun Liang
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

5.  Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus.

Authors:  Philippe Pasero; Aaron Bensimon; Etienne Schwob
Journal:  Genes Dev       Date:  2002-10-01       Impact factor: 11.361

6.  Activation of silent replication origins at autonomously replicating sequence elements near the HML locus in budding yeast.

Authors:  M Vujcic; C A Miller; D Kowalski
Journal:  Mol Cell Biol       Date:  1999-09       Impact factor: 4.272

7.  Activity of the c-myc replicator at an ectopic chromosomal location.

Authors:  M Malott; M Leffak
Journal:  Mol Cell Biol       Date:  1999-08       Impact factor: 4.272

8.  Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin.

Authors:  S K Dhar; K Yoshida; Y Machida; P Khaira; B Chaudhuri; J A Wohlschlegel; M Leffak; J Yates; A Dutta
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

9.  Fine mapping of a replication origin of human DNA.

Authors:  M Giacca; L Zentilin; P Norio; S Diviacco; D Dimitrova; G Contreas; G Biamonti; G Perini; F Weighardt; S Riva
Journal:  Proc Natl Acad Sci U S A       Date:  1994-07-19       Impact factor: 11.205

10.  The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity.

Authors:  L D Mesner; X Li; P A Dijkwel; J L Hamlin
Journal:  Mol Cell Biol       Date:  2003-02       Impact factor: 4.272

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  10 in total

1.  Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome.

Authors:  Andreas C W Jenke; Isa M Stehle; Frank Herrmann; Tobias Eisenberger; Armin Baiker; Jürgen Bode; Frank O Fackelmayer; Hans J Lipps
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-22       Impact factor: 11.205

2.  Identification of new human origins of DNA replication by an origin-trapping assay.

Authors:  Jeannine Gerhardt; Samira Jafar; Mark-Peter Spindler; Elisabeth Ott; Aloys Schepers
Journal:  Mol Cell Biol       Date:  2006-09-05       Impact factor: 4.272

3.  The Chinese hamster dihydrofolate reductase replication origin decision point follows activation of transcription and suppresses initiation of replication within transcription units.

Authors:  Takayo Sasaki; Sunita Ramanathan; Yukiko Okuno; Chiharu Kumagai; Seemab S Shaikh; David M Gilbert
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

4.  Intrinsically bent DNA sites in the Drosophila melanogaster third chromosome amplified domain.

Authors:  Fabrícia Gimenes; Mariana Aprígio Assis; Adriana Fiorini; Vânia Aparecida Mareze; Nadia Monesi; Maria Aparecida Fernandez
Journal:  Mol Genet Genomics       Date:  2009-02-15       Impact factor: 3.291

5.  Prohibitin physically interacts with MCM proteins and inhibits mammalian DNA replication.

Authors:  Wasia Rizwani; Mark Alexandrow; Srikumar Chellappan
Journal:  Cell Cycle       Date:  2009-05-27       Impact factor: 4.534

6.  Multiple mechanisms contribute to Schizosaccharomyces pombe origin recognition complex-DNA interactions.

Authors:  Christopher R Houchens; Wenyan Lu; Ray-Yuan Chuang; Mark G Frattini; Alex Fuller; Pam Simancek; Thomas J Kelly
Journal:  J Biol Chem       Date:  2008-08-22       Impact factor: 5.157

7.  DNA bending in the replication zone of the C3 DNA puff amplicon of Rhynchosciara americana (Diptera: Sciaridae).

Authors:  Adriana Fiorini; Fabiana Souza de Gouveia; Maria Albertina Miranda de Soares; Ann Jacob Stocker; Ricardo Rodrigues Ciferri; Maria Aparecida Fernandez
Journal:  Mol Biol Rep       Date:  2006-03       Impact factor: 2.742

8.  Exploiting a minimal system to study the epigenetic control of DNA replication: the interplay between transcription and replication.

Authors:  Isa M Stehle; Monica F Scinteie; Armin Baiker; Andreas C W Jenke; Hans J Lipps
Journal:  Chromosome Res       Date:  2003       Impact factor: 4.620

9.  Molecular architecture of the DNA replication origin activation checkpoint.

Authors:  Slavica Tudzarova; Matthew W B Trotter; Alex Wollenschlaeger; Claire Mulvey; Jasminka Godovac-Zimmermann; Gareth H Williams; Kai Stoeber
Journal:  EMBO J       Date:  2010-08-20       Impact factor: 14.012

10.  Distinct epigenetic features of differentiation-regulated replication origins.

Authors:  Owen K Smith; RyanGuk Kim; Haiqing Fu; Melvenia M Martin; Chii Mei Lin; Koichi Utani; Ya Zhang; Anna B Marks; Marc Lalande; Stormy Chamberlain; Maxwell W Libbrecht; Eric E Bouhassira; Michael C Ryan; William S Noble; Mirit I Aladjem
Journal:  Epigenetics Chromatin       Date:  2016-05-10       Impact factor: 4.954

  10 in total

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