Literature DB >> 12967963

PRECIS: protein reports engineered from concise information in SWISS-PROT.

A L Mitchell1, J R Reich, T K Attwood.   

Abstract

MOTIVATION: There have been several endeavours to address the problem of annotating sequence data computationally, but the task is non-trivial and few tools have emerged that gather useful information on a given sequence, or set of sequences, in a simple and convenient manner. As more genome projects bear fruit, the mass of uncharacterized sequence data accumulating in public repositories grows ever larger. There is thus a pressing need for tools to support the process of automatic analysis and annotation of newly determined sequences. With this in mind, we have developed PRECIS, which automatically creates protein reports from sets of SWISS-PROT entries, collating results into structured reports, detailing known biological and medical information, literature and database cross-references, and relevant keywords.

Mesh:

Substances:

Year:  2003        PMID: 12967963     DOI: 10.1093/bioinformatics/btg204

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  PRINTS and PRINTS-S shed light on protein ancestry.

Authors:  T K Attwood; M J Blythe; D R Flower; A Gaulton; J E Mabey; N Maudling; L McGregor; A L Mitchell; G Moulton; K Paine; P Scordis
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  PRINTS and its automatic supplement, prePRINTS.

Authors:  T K Attwood; P Bradley; D R Flower; A Gaulton; N Maudling; A L Mitchell; G Moulton; A Nordle; K Paine; P Taylor; A Uddin; C Zygouri
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Visualising biological data: a semantic approach to tool and database integration.

Authors:  Steve Pettifer; David Thorne; Philip McDermott; James Marsh; Alice Villéger; Douglas B Kell; Teresa K Attwood
Journal:  BMC Bioinformatics       Date:  2009-06-16       Impact factor: 3.169

  3 in total

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