Literature DB >> 12963376

Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome.

Tina Daviter1, Hans-Joachim Wieden, Marina V Rodnina.   

Abstract

Elongation factor Tu (EF-Tu) is a GTP-binding protein that delivers aminoacyl-tRNA to the A site of the ribosome during protein synthesis. The mechanism of GTP hydrolysis in EF-Tu on the ribosome is poorly understood. It is known that mutations of a conserved histidine residue in the switch II region of the factor, His84 in Escherichia coli EF-Tu, impair GTP hydrolysis. However, the partial reaction which is directly affected by mutations of His84 was not identified and the effect on GTP hydrolysis was not quantified. Here, we show that the replacement of His84 with Ala reduces the rate constant of GTP hydrolysis more than 10(6)-fold, whereas the preceding steps of ternary complex binding to the ribosome, codon recognition and, most importantly, the GTPase activation step are affected only slightly. These results show that His84 plays a key role in the chemical step of GTP hydrolysis. Rate constants of GTP hydrolysis by wild-type EF-Tu, measured using the slowly hydrolyzable GTP analog, GTPgammaS, showed no dependence on pH, indicating that His84 does not act as a general base. We propose that the catalytic role of His84 is to stabilize the transition state of GTP hydrolysis by hydrogen bonding to the attacking water molecule or, possibly, the gamma-phosphate group of GTP.

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Year:  2003        PMID: 12963376     DOI: 10.1016/s0022-2836(03)00947-1

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  72 in total

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2.  Kinetic basis for global loss of fidelity arising from mismatches in the P-site codon:anticodon helix.

Authors:  Hani S Zaher; Rachel Green
Journal:  RNA       Date:  2010-08-19       Impact factor: 4.942

3.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

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4.  Distortion of tRNA upon near-cognate codon recognition on the ribosome.

Authors:  Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  J Biol Chem       Date:  2011-01-06       Impact factor: 5.157

5.  Assembly of Q{beta} viral RNA polymerase with host translational elongation factors EF-Tu and -Ts.

Authors:  Daijiro Takeshita; Kozo Tomita
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

6.  An active role for tRNA in decoding beyond codon:anticodon pairing.

Authors:  Luisa Cochella; Rachel Green
Journal:  Science       Date:  2005-05-20       Impact factor: 47.728

7.  On possible pitfalls in ab initio quantum mechanics/molecular mechanics minimization approaches for studies of enzymatic reactions.

Authors:  Marco Klähn; Sonja Braun-Sand; Edina Rosta; Arieh Warshel
Journal:  J Phys Chem B       Date:  2005-08-18       Impact factor: 2.991

Review 8.  Elfamycins: inhibitors of elongation factor-Tu.

Authors:  Samantha M Prezioso; Nicole E Brown; Joanna B Goldberg
Journal:  Mol Microbiol       Date:  2017-08-09       Impact factor: 3.501

9.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

10.  Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis.

Authors:  Elizabeth Villa; Jayati Sengupta; Leonardo G Trabuco; Jamie LeBarron; William T Baxter; Tanvir R Shaikh; Robert A Grassucci; Poul Nissen; Måns Ehrenberg; Klaus Schulten; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

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