Literature DB >> 12944256

Molecular dynamics simulation of surfactin molecules at the water-hexane interface.

J P Nicolas1.   

Abstract

The dynamics of surfactin, a lipopeptide surfactant from Bacillus subtilis, has been studied by molecular dynamics at different interfacial concentrations in a water-hexane medium reproducing a hydrophilic/hydrophobic biphasic system. The shapes and orientations of surfactin molecules, as hydrogen bonds and Ramachandran angles, have been recorded to investigate the environment effect on the molecular structure. We demonstrate that the peptidic backbone can exhibit a large flexibility and that conformational motions and structural fluctuations depend strongly on the interfacial concentration. Moreover, we have measured the surface activity of this biosurfactant by computing the interfacial tension and lateral and rotational diffusion coefficients.

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Year:  2003        PMID: 12944256      PMCID: PMC1303315          DOI: 10.1016/S0006-3495(03)74571-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  21 in total

1.  Conformations of amino acids in proteins.

Authors:  Sven Hovmöller; Tuping Zhou; Tomas Ohlson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-04-26

2.  Peptide-plane flipping in proteins.

Authors:  S Hayward
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  Mechanism of inactivation of enveloped viruses by the biosurfactant surfactin from Bacillus subtilis.

Authors:  D Vollenbroich; M Ozel; J Vater; R M Kamp; G Pauli
Journal:  Biologicals       Date:  1997-09       Impact factor: 1.856

4.  Environment affects amino acid preference for secondary structure.

Authors:  L Zhong; W C Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-15       Impact factor: 11.205

5.  Translational and rotational diffusion of proteins.

Authors:  P E Smith; W F van Gunsteren
Journal:  J Mol Biol       Date:  1994-02-18       Impact factor: 5.469

6.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

7.  Satisfying hydrogen bonding potential in proteins.

Authors:  I K McDonald; J M Thornton
Journal:  J Mol Biol       Date:  1994-05-20       Impact factor: 5.469

8.  A study on the interactions of surfactin with phospholipid vesicles.

Authors:  A Grau; J C Gómez Fernández; F Peypoux; A Ortiz
Journal:  Biochim Biophys Acta       Date:  1999-05-12

9.  Peptide environment specifies conformation. Helicity of hydrophobic segments compared in aqueous, organic, and membrane environments.

Authors:  S C Li; C M Deber
Journal:  J Biol Chem       Date:  1993-11-05       Impact factor: 5.157

10.  Solution three-dimensional structure of surfactin: a cyclic lipopeptide studied by 1H-NMR, distance geometry, and molecular dynamics.

Authors:  J M Bonmatin; M Genest; H Labbé; M Ptak
Journal:  Biopolymers       Date:  1994-07       Impact factor: 2.505

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  6 in total

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Authors:  Abraham Badu-Tawiah; R Graham Cooks
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-08       Impact factor: 3.109

2.  A coarse-grain molecular dynamics study of oil-water interfaces in the presence of silica nanoparticles and nonionic surfactants.

Authors:  Parul Katiyar; Jayant K Singh
Journal:  J Chem Phys       Date:  2017-05-28       Impact factor: 3.488

3.  Cyclo-hexa-peptides at the water/cyclohexane interface: a molecular dynamics simulation.

Authors:  Min Cen; Jian Fen Fan; Dong Yan Liu; Xue Zeng Song; Jian Liu; Wei Qun Zhou; He Ming Xiao
Journal:  J Mol Model       Date:  2012-09-16       Impact factor: 1.810

4.  The dynamic surface tension of atmospheric aerosol surfactants reveals new aspects of cloud activation.

Authors:  Barbara Nozière; Christine Baduel; Jean-Luc Jaffrezo
Journal:  Nat Commun       Date:  2014-02-25       Impact factor: 14.919

5.  Production of surfactin from Bacillus subtilis MZ-7 grown on pharmamedia commercial medium.

Authors:  Muaaz Mutaz Al-Ajlani; Muhammad Abid Sheikh; Zeeshan Ahmad; Shahida Hasnain
Journal:  Microb Cell Fact       Date:  2007-06-05       Impact factor: 5.328

6.  Evaluation of various methods of selection of B. subtilis strains capable of secreting surface-active compounds.

Authors:  Beata Koim-Puchowska; Grzegorz Kłosowski; Dawid Mikulski; Aleksandra Menka
Journal:  PLoS One       Date:  2019-11-12       Impact factor: 3.240

  6 in total

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