Literature DB >> 12943907

Determination of the conformation and stability of simple homopolypeptides using solid-state NMR.

Katherine A Henzler Wildman1, Erin E Wilson, Dong-Kuk Lee, A Ramamoorthy.   

Abstract

15N CPMAS, 13C CPMAS and 1H CRAMPS spectra of several polypeptide samples were compared to determine the useful features of each technique. 13C CPMAS is the most well-established technique and is useful for quick determination of secondary structure. The 15N nucleus is more sensitive to exact hydrogen-bonding parameters, which complicates interpretation of the spectra. However, it is better for resolving end effects and structural types in short oligomers. 1H CRAMPS spectra are similar to 13C CPMAS in the information obtained, but the resolution is not as good. Using 13C CPMAS, the conformation of polyglycine was investigated in detail. Precipitation from solvents such as DCA or TFA resulted in the rippled beta-sheet structure (PG I), while 3(1)-helix (PG II) was formed by precipitation from aqueous solutions of LiBr. Grinding the sample resulted in an increase in the amount of PG I, indicating that this form is more stable in the solid state. These results agree with previous work on poly(L-alanine) showing that the beta-sheet form is more stable in the solid state. Homopolypeptides with larger side chains did not change conformation upon grinding due to the greater difficulty in disrupting van der Waals interactions and inertia of the large side chains.

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Year:  2003        PMID: 12943907     DOI: 10.1016/s0926-2040(03)00048-1

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  5 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Helix stability of oligoglycine, oligoalanine, and oligo-β-alanine dodecamers reflected by hydrogen-bond persistence.

Authors:  Chengyu Liu; Jay W Ponder; Garland R Marshall
Journal:  Proteins       Date:  2014-09-20

3.  Raman studies of solution polyglycine conformations.

Authors:  Sergei Bykov; Sanford Asher
Journal:  J Phys Chem B       Date:  2010-05-20       Impact factor: 2.991

4.  Time-resolved dehydration-induced structural changes in an intact bovine cortical bone revealed by solid-state NMR spectroscopy.

Authors:  Peizhi Zhu; Jiadi Xu; Nadder Sahar; Michael D Morris; David H Kohn; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2009-12-02       Impact factor: 15.419

5.  Structure and orientation of pardaxin determined by NMR experiments in model membranes.

Authors:  Fernando Porcelli; Bethany Buck; Dong-Kuk Lee; Kevin J Hallock; Ayyalusamy Ramamoorthy; Gianluigi Veglia
Journal:  J Biol Chem       Date:  2004-07-29       Impact factor: 5.157

  5 in total

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