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Literature DB >> 12943365

Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution.

In-Geol Choi¹, Dong Hae Shin, Jeroen Brandsen, Jaru Jancarik, Didier Busso, Hisao Yokota, Rosalind Kim, Sung-Hou Kim.

Abstract

Mesh：

Substances：
Bacterial Proteins

Year: 2003 PMID： 12943365 DOI： 10.1023/a:1024625122089

Source DB: PubMed Journal: J Struct Funct Genomics ISSN： 1345-711X

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16 in total

1. Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif.

Authors: X Chen; D L Court; X Ji
Journal: Proc Natl Acad Sci U S A Date: 1999-07-20 Impact factor: 11.205

2. Software for handling macromolecular envelopes.

Authors: G J Kleywegt; T A Jones
Journal: Acta Crystallogr D Biol Crystallogr Date: 1999-04

3. CDD: a database of conserved domain alignments with links to domain three-dimensional structure.

Authors: Aron Marchler-Bauer; Anna R Panchenko; Benjamin A Shoemaker; Paul A Thiessen; Lewis Y Geer; Stephen H Bryant
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

4. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Authors: T Dandekar; M Huynen; J T Regula; B Ueberle; C U Zimmermann; M A Andrade; T Doerks; L Sánchez-Pulido; B Snel; M Suyama; Y P Yuan; R Herrmann; P Bork
Journal: Nucleic Acids Res Date: 2000-09-01 Impact factor: 16.971

5. Structure of the 30S ribosomal subunit.

Authors: B T Wimberly; D E Brodersen; W M Clemons; R J Morgan-Warren; A P Carter; C Vonrhein; T Hartsch; V Ramakrishnan
Journal: Nature Date: 2000-09-21 Impact factor: 49.962

6. Methods used in the structure determination of bovine mitochondrial F1 ATPase.

Authors: J P Abrahams; A G Leslie
Journal: Acta Crystallogr D Biol Crystallogr Date: 1996-01-01

7. Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors: T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal: Acta Crystallogr A Date: 1991-03-01 Impact factor: 2.290

8. Collaborative Computational Project, number 4: providing programs for protein crystallography.

Authors: E J Dodson; M Winn; A Ralph
Journal: Methods Enzymol Date: 1997 Impact factor: 1.600

9. Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors: A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal: Acta Crystallogr D Biol Crystallogr Date: 1998-09-01

10. [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

Authors: Eric de La Fortelle; Gérard Bricogne
Journal: Methods Enzymol Date: 1997 Impact factor: 1.600

9 in total

Review 1. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center.

Authors: Dong Hae Shin; Jingtong Hou; John-Marc Chandonia; Debanu Das; In-Geol Choi; Rosalind Kim; Sung-Hou Kim
Journal: J Struct Funct Genomics Date: 2007-09-02

2. Rapid model building of beta-sheets in electron-density maps.

Authors: Thomas C Terwilliger
Journal: Acta Crystallogr D Biol Crystallogr Date: 2010-02-12

3. Crystal structure of the GerBC component of a Bacillus subtilis spore germinant receptor.

Authors: Yunfeng Li; Barbara Setlow; Peter Setlow; Bing Hao
Journal: J Mol Biol Date: 2010-07-21 Impact factor: 5.469

4. Rapid model building of alpha-helices in electron-density maps.

Authors: Thomas C Terwilliger
Journal: Acta Crystallogr D Biol Crystallogr Date: 2010-02-12

5. Rapid chain tracing of polypeptide backbones in electron-density maps.

Authors: Thomas C Terwilliger
Journal: Acta Crystallogr D Biol Crystallogr Date: 2010-02-12

6. Structural and functional characterization of an organic hydroperoxide resistance protein from Mycoplasma gallisepticum.

Authors: Cheryl Jenkins; Ram Samudrala; Steven J Geary; Steven P Djordjevic
Journal: J Bacteriol Date: 2008-01-11 Impact factor: 3.490

Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution.

1. Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif.

2. Software for handling macromolecular envelopes.

3. CDD: a database of conserved domain alignments with links to domain three-dimensional structure.

4. Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

5. Structure of the 30S ribosomal subunit.

6. Methods used in the structure determination of bovine mitochondrial F1 ATPase.

7. Improved methods for building protein models in electron density maps and the location of errors in these models.

8. Collaborative Computational Project, number 4: providing programs for protein crystallography.

9. Crystallography & NMR system: A new software suite for macromolecular structure determination.

10. [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

Review 1. Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center.

2. Rapid model building of beta-sheets in electron-density maps.

3. Crystal structure of the GerBC component of a Bacillus subtilis spore germinant receptor.

4. Rapid model building of alpha-helices in electron-density maps.

5. Rapid chain tracing of polypeptide backbones in electron-density maps.

6. Structural and functional characterization of an organic hydroperoxide resistance protein from Mycoplasma gallisepticum.

Review 7. Structure-based functional inference in structural genomics.

8. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard.

9. Large-scale computational discovery and analysis of virus-derived microbial nanocompartments.