Literature DB >> 12941927

3' to 5' exonuclease activity of herpes simplex virus type 1 DNA polymerase modulates its strand displacement activity.

Yali Zhu1, Kelly S Trego, Liping Song, Deborah S Parris.   

Abstract

Using a minicircle DNA primer-template, the wild-type catalytic subunit of herpes simplex virus type 1 (HSV-1) DNA polymerase (pol) was shown to lack significant strand displacement activity with or without its processivity factor, UL42. However, an exonuclease-deficient (exo(-)) pol (D368A) was capable of slow strand displacement. Although UL42 increased the rate (2/s) and processivity of strand displacement by exo(-) pol, the rate was slower than that for gap-filling synthesis. High inherent excision rates on matched primer-templates and rapid idling-turnover (successive rounds of excision and polymerization) of exo-proficient polymerases correlated with poor strand displacement activity. The results suggest that the exo activity of HSV-1 pol modulates its ability to engage in strand displacement, a function that may be important to the viability and genome stability of the virus.

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Year:  2003        PMID: 12941927      PMCID: PMC224577          DOI: 10.1128/jvi.77.18.10147-10153.2003

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  31 in total

1.  Leading and lagging strand DNA synthesis in vitro by a reconstituted herpes simplex virus type 1 replisome.

Authors:  M Falkenberg; I R Lehman; P Elias
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  The herpes simplex virus type 1 DNA polymerase processivity factor increases fidelity without altering pre-steady-state rate constants for polymerization or excision.

Authors:  Murari Chaudhuri; Liping Song; Deborah S Parris
Journal:  J Biol Chem       Date:  2003-01-08       Impact factor: 5.157

3.  Evidence against a simple tethering model for enhancement of herpes simplex virus DNA polymerase processivity by accessory protein UL42.

Authors:  Murari Chaudhuri; Deborah S Parris
Journal:  J Virol       Date:  2002-10       Impact factor: 5.103

4.  The herpes simplex virus type-1 single-strand DNA-binding protein (ICP8) promotes strand invasion.

Authors:  Amitabh V Nimonkar; Paul E Boehmer
Journal:  J Biol Chem       Date:  2003-03-14       Impact factor: 5.157

5.  Impaired mismatch extension by a herpes simplex DNA polymerase mutant with an editing nuclease defect.

Authors:  R O Baker; J D Hall
Journal:  J Biol Chem       Date:  1998-09-11       Impact factor: 5.157

6.  Characterization of a 3'----5' exonuclease activity in the phage phi 29-encoded DNA polymerase.

Authors:  L Blanco; M Salas
Journal:  Nucleic Acids Res       Date:  1985-02-25       Impact factor: 16.971

7.  The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability.

Authors:  Y H Jin; R Obert; P M Burgers; T A Kunkel; M A Resnick; D A Gordenin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

8.  Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3'-5'-exonuclease activities of Pol delta in the creation of a ligatable nick.

Authors:  Yong Hwan Jin; Rao Ayyagari; Michael A Resnick; Dmitry A Gordenin; Peter M J Burgers
Journal:  J Biol Chem       Date:  2002-11-06       Impact factor: 5.157

9.  Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 AND DNA2.

Authors:  Rao Ayyagari; Xavier V Gomes; Dmitry A Gordenin; Peter M J Burgers
Journal:  J Biol Chem       Date:  2002-11-06       Impact factor: 5.157

10.  DNA polymerase delta: one polypeptide, two activities.

Authors:  L P Goscin; J J Byrnes
Journal:  Biochemistry       Date:  1982-05-11       Impact factor: 3.162

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  12 in total

1.  Coordinated leading and lagging strand DNA synthesis by using the herpes simplex virus 1 replication complex and minicircle DNA templates.

Authors:  Gudrun Stengel; Robert D Kuchta
Journal:  J Virol       Date:  2010-11-10       Impact factor: 5.103

2.  Mutations that decrease DNA binding of the processivity factor of the herpes simplex virus DNA polymerase reduce viral yield, alter the kinetics of viral DNA replication, and decrease the fidelity of DNA replication.

Authors:  Changying Jiang; Ying T Hwang; John C W Randell; Donald M Coen; Charles B C Hwang
Journal:  J Virol       Date:  2007-01-17       Impact factor: 5.103

3.  Protein Displacement by Herpes Helicase-Primase and the Key Role of UL42 during Helicase-Coupled DNA Synthesis by the Herpes Polymerase.

Authors:  Sarah Michelle Dickerson; Robert D Kuchta
Journal:  Biochemistry       Date:  2017-05-19       Impact factor: 3.162

4.  Processing of lagging-strand intermediates in vitro by herpes simplex virus type 1 DNA polymerase.

Authors:  Yali Zhu; Zetang Wu; M Cristina Cardoso; Deborah S Parris
Journal:  J Virol       Date:  2010-05-05       Impact factor: 5.103

5.  Evaluation of the role of the vaccinia virus uracil DNA glycosylase and A20 proteins as intrinsic components of the DNA polymerase holoenzyme.

Authors:  Kathleen A Boyle; Eleni S Stanitsa; Matthew D Greseth; Jill K Lindgren; Paula Traktman
Journal:  J Biol Chem       Date:  2011-05-13       Impact factor: 5.157

6.  Herpes Simplex Virus 1 DNA Polymerase RNase H Activity Acts in a 3'-to-5' Direction and Is Dependent on the 3'-to-5' Exonuclease Active Site.

Authors:  Jessica L Lawler; Purba Mukherjee; Donald M Coen
Journal:  J Virol       Date:  2018-02-12       Impact factor: 5.103

7.  HSV-1 DNA polymerase 3'-5' exonuclease-deficient mutant D368A exhibits severely reduced viral DNA synthesis and polymerase expression.

Authors:  Jessica L Lawler; Donald M Coen
Journal:  J Gen Virol       Date:  2018-09-03       Impact factor: 3.891

8.  Phylogenetic analysis of the DNA polymerase gene of a novel alphaherpesvirus isolated from an Indian Gyps vulture.

Authors:  Maria Cardoso; Alex Hyatt; Paul Selleck; Sue Lowther; Vibhu Prakash; Deborah Pain; Andrew A Cunningham; David Boyle
Journal:  Virus Genes       Date:  2005-05       Impact factor: 2.198

9.  Kinetic approaches to understanding the mechanisms of fidelity of the herpes simplex virus type 1 DNA polymerase.

Authors:  Yali Zhu; Jason Stroud; Liping Song; Deborah S Parris
Journal:  J Nucleic Acids       Date:  2010-12-13

10.  C-terminal extension of the yeast mitochondrial DNA polymerase determines the balance between synthesis and degradation.

Authors:  Katrin Viikov; Olga Jasnovidova; Tiina Tamm; Juhan Sedman
Journal:  PLoS One       Date:  2012-03-14       Impact factor: 3.240

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