Literature DB >> 12939271

Identification of a novel TATA element-binding protein binding region at the N terminus of the Saccharomyces cerevisiae TAF1 protein.

Shinya Takahata1, Hidei Ryu, Kazushige Ohtsuki, Koji Kasahara, Masashi Kawaichi, Tetsuro Kokubo.   

Abstract

TFIID, a multiprotein complex composed of TATA element-binding protein (TBP) and 14 TBP-associated factors (TAFs), can directly recognize core promoter elements and mediate transcriptional activation. The TAF N-terminal domain (TAND) of TAF1 may play a significant role in these two principal TFIID functions by regulating the access of TBP to the TATA element. In yeast, TAND consists of two subdomains, TAND1 (10-37 amino acids (aa)) and TAND2 (46-71 aa), which interact with the concave and convex surfaces of TBP, respectively. Here we demonstrate that another region located on the C-terminal side of TAND2 (82-139 aa) can also bind to TBP and induce transcriptional activation when tethered to DNA as a GAL4 fusion protein. As these properties are the same as those of TAND1, we denoted this sequence as TAND3. Detailed mutational analyses revealed that three blocks of hydrophobic amino acid residues located within TAND3 are required not only for TBP binding and transcriptional activation but also for supporting cell growth and the efficient transcription of a subset of genes. We also show that the surface of TBP recognized by TAND3 is broader than that recognized by TAND1, although these regions overlap partially. Supporting these observations is that TAND1 can be at least partly functionally substituted by TAND3.

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Year:  2003        PMID: 12939271     DOI: 10.1074/jbc.M306886200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  9 in total

1.  Investigating the protein-protein interactions of the yeast Hsp90 chaperone system by two-hybrid analysis: potential uses and limitations of this approach.

Authors:  Stefan H Millson; Andrew W Truman; Francis Wolfram; Victoria King; Barry Panaretou; Chrisostomos Prodromou; Laurence H Pearl; Peter W Piper
Journal:  Cell Stress Chaperones       Date:  2004       Impact factor: 3.667

2.  Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.

Authors:  Kazushige Ohtsuki; Koji Kasahara; Katsuhiko Shirahige; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2009-12-21       Impact factor: 16.971

3.  Molecular and genetic characterization of a Taf1p domain essential for yeast TFIID assembly.

Authors:  Madhu V Singh; Christin E Bland; P Anthony Weil
Journal:  Mol Cell Biol       Date:  2004-06       Impact factor: 4.272

4.  Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae.

Authors:  Koji Kasahara; Kazushige Ohtsuki; Sewon Ki; Kayo Aoyama; Hiroyuki Takahashi; Takehiko Kobayashi; Katsuhiko Shirahige; Tetsuro Kokubo
Journal:  Mol Cell Biol       Date:  2007-07-23       Impact factor: 4.272

5.  Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae.

Authors:  Fuminori Sugihara; Koji Kasahara; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2010-08-30       Impact factor: 16.971

6.  A Random Screen Using a Novel Reporter Assay System Reveals a Set of Sequences That Are Preferred as the TATA or TATA-Like Elements in the CYC1 Promoter of Saccharomyces cerevisiae.

Authors:  Kiyoshi Watanabe; Makoto Yabe; Koji Kasahara; Tetsuro Kokubo
Journal:  PLoS One       Date:  2015-06-05       Impact factor: 3.240

7.  High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation.

Authors:  Madhanagopal Anandapadamanaban; Cecilia Andresen; Sara Helander; Yoshifumi Ohyama; Marina I Siponen; Patrik Lundström; Tetsuro Kokubo; Mitsuhiko Ikura; Martin Moche; Maria Sunnerhagen
Journal:  Nat Struct Mol Biol       Date:  2013-07-14       Impact factor: 15.369

8.  SAGA mediates transcription from the TATA-like element independently of Taf1p/TFIID but dependent on core promoter structures in Saccharomyces cerevisiae.

Authors:  Kiyoshi Watanabe; Tetsuro Kokubo
Journal:  PLoS One       Date:  2017-11-27       Impact factor: 3.240

9.  Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II.

Authors:  Koji Kasahara; Sewon Ki; Kayo Aoyama; Hiroyuki Takahashi; Tetsuro Kokubo
Journal:  Nucleic Acids Res       Date:  2008-01-10       Impact factor: 16.971

  9 in total

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