Literature DB >> 12939140

Solution structure and backbone dynamics of the TGFbeta type II receptor extracellular domain.

Shashank Deep1, Kerfoot P Walker, Zhanyong Shu, Andrew P Hinck.   

Abstract

Isoforms of transforming growth factor beta (TGFbeta) are 25 kDa homodimeric polypeptides that signal by binding and bringing together two related, functionally distinct cell surface receptors designated as TbetaR1 and TbetaR2. Here, we report the solution structure of the 13.8 kDa extracellular domain of human TbetaR2 (ecTbetaR2) as calculated from N(N)-H(N), C(alpha)-H(alpha), and C(alpha)-C(O) residual dipolar coupling restraints in conjunction with NOE distance, dihedral angle, and scalar coupling restraints. Comparison of the free ecTbetaR2 solution structure with the TGFbeta3-bound ecTbetaR2 crystal structure reveals backbone conformations that superimpose with RMSDs of 1.0 A over the regions of regular secondary structure and 1.4 A overall. The differences in structure fall mainly in loop regions that are either poorly defined by the available NMR data or are involved in crystal contacts. The noted similarities between the NMR structure of the free form and the crystal structure of the TGFbeta-bound form are also consistent with the close correspondence, 0.16 A RMSD for regions of secondary structure and 0.51 A RMSD overall, for the crystal structure of free ecTbetaR2 as compared to the crystal structure of TGFbeta3-bound ecTbetaR2. Despite the apparent similarities between the free and the bound forms, there appears to be small but significant differences in structure involving the interfacial contact region of the receptor. Measurements of backbone (15)N relaxation times and interpretation of these by the model-free formalism with axial diffusional anisotropy further reveal significant ms to micros time scale motions centered about two of the conserved disulfide bonds and in several residues that comprise the TGFbeta binding surface. Together, these observations indicate that binding likely occurs through a mechanism with a small component of induced fit character, whereby flexibility within the receptor facilitates the transition to the TGFbeta-bound state.

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Year:  2003        PMID: 12939140     DOI: 10.1021/bi034366a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Protein structure prediction using sparse dipolar coupling data.

Authors:  Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu
Journal:  Nucleic Acids Res       Date:  2004-01-26       Impact factor: 16.971

2.  Model-free analysis of protein dynamics: assessment of accuracy and model selection protocols based on molecular dynamics simulation.

Authors:  Jianhan Chen; Charles L Brooks; Peter E Wright
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

3.  Sequential resonance assignments of the extracellular domain of the human TGFbeta type II receptor in complex with monomeric TGFbeta3.

Authors:  Udayar Ilangovan; Shashank Deep; Cynthia S Hinck; Andrew P Hinck
Journal:  J Biomol NMR       Date:  2004-05       Impact factor: 2.835

4.  Peptide ligands that use a novel binding site to target both TGF-β receptors.

Authors:  Lingyin Li; Brendan P Orner; Tao Huang; Andrew P Hinck; Laura L Kiessling
Journal:  Mol Biosyst       Date:  2010-10-04

5.  NMR solution structure and backbone dynamics of domain III of the E protein of tick-borne Langat flavivirus suggests a potential site for molecular recognition.

Authors:  Munia Mukherjee; Kaushik Dutta; Mark A White; David Cowburn; Robert O Fox
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

Review 6.  Structural Biology and Evolution of the TGF-β Family.

Authors:  Andrew P Hinck; Thomas D Mueller; Timothy A Springer
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-12-01       Impact factor: 10.005

7.  Conformational flexibility in the binding surface of the potassium channel blocker ShK.

Authors:  Inbal Sher; Shih Chieh Chang; Ying Li; Sandeep Chhabra; Arthur G Palmer; Raymond S Norton; Jordan H Chill
Journal:  Chembiochem       Date:  2014-09-18       Impact factor: 3.164

8.  Production, Isolation, and Structural Analysis of Ligands and Receptors of the TGF-β Superfamily.

Authors:  Tao Huang; Andrew P Hinck
Journal:  Methods Mol Biol       Date:  2016

9.  Biological activity differences between TGF-β1 and TGF-β3 correlate with differences in the rigidity and arrangement of their component monomers.

Authors:  Tao Huang; Seth L Schor; Andrew P Hinck
Journal:  Biochemistry       Date:  2014-09-05       Impact factor: 3.162

10.  Structure of AMH bound to AMHR2 provides insight into a unique signaling pair in the TGF-β family.

Authors:  Kaitlin N Hart; William A Stocker; Nicholas G Nagykery; Kelly L Walton; Craig A Harrison; Patricia K Donahoe; David Pépin; Thomas B Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-29       Impact factor: 11.205

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