Literature DB >> 12925794

Structural genomics of the SARS coronavirus: cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein.

Valérie Campanacci1, Marie-Pierre Egloff, Sonia Longhi, François Ferron, Corinne Rancurel, Aurelia Salomoni, Cécile Durousseau, Fabienne Tocque, Nicolas Brémond, Jessika C Dobbe, Eric J Snijder, Bruno Canard, Christian Cambillau.   

Abstract

The aetiologic agent of the recent epidemics of Severe Acute Respiratory Syndrome (SARS) is a positive-stranded RNA virus (SARS-CoV) belonging to the Coronaviridae family and its genome differs substantially from those of other known coronaviruses. SARS-CoV is transmissible mainly by the respiratory route and to date there is no vaccine and no prophylactic or therapeutic treatments against this agent. A SARS-CoV whole-genome approach has been developed aimed at determining the crystal structure of all of its proteins or domains. These studies are expected to greatly facilitate drug design. The genomes of coronaviruses are between 27 and 31.5 kbp in length, the largest of the known RNA viruses, and encode 20-30 mature proteins. The functions of many of these polypeptides, including the Nsp9-Nsp10 replicase-cleavage products, are still unknown. Here, the cloning, Escherichia coli expression, purification and crystallization of the SARS-CoV Nsp9 protein, the first SARS-CoV protein to be crystallized, are reported. Nsp9 crystals diffract to 2.8 A resolution and belong to space group P6(1/5)22, with unit-cell parameters a = b = 89.7, c = 136.7 A. With two molecules in the asymmetric unit, the solvent content is 60% (V(M) = 3.1 A(3) Da(-1)).

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Year:  2003        PMID: 12925794      PMCID: PMC7161644          DOI: 10.1107/s0907444903016779

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


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  22 in total

1.  In vitro reconstitution of SARS-coronavirus mRNA cap methylation.

Authors:  Mickaël Bouvet; Claire Debarnot; Isabelle Imbert; Barbara Selisko; Eric J Snijder; Bruno Canard; Etienne Decroly
Journal:  PLoS Pathog       Date:  2010-04-22       Impact factor: 6.823

2.  The severe acute respiratory syndrome-coronavirus replicative protein nsp9 is a single-stranded RNA-binding subunit unique in the RNA virus world.

Authors:  Marie-Pierre Egloff; François Ferron; Valérie Campanacci; Sonia Longhi; Corinne Rancurel; Hélène Dutartre; Eric J Snijder; Alexander E Gorbalenya; Christian Cambillau; Bruno Canard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-08       Impact factor: 11.205

3.  Localization and membrane topology of coronavirus nonstructural protein 4: involvement of the early secretory pathway in replication.

Authors:  M Oostra; E G te Lintelo; M Deijs; M H Verheije; P J M Rottier; C A M de Haan
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4.  One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities.

Authors:  Lorenzo Subissi; Clara C Posthuma; Axelle Collet; Jessika C Zevenhoven-Dobbe; Alexander E Gorbalenya; Etienne Decroly; Eric J Snijder; Bruno Canard; Isabelle Imbert
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5.  Processing of open reading frame 1a replicase proteins nsp7 to nsp10 in murine hepatitis virus strain A59 replication.

Authors:  Damon J Deming; Rachel L Graham; Mark R Denison; Ralph S Baric
Journal:  J Virol       Date:  2007-07-18       Impact factor: 5.103

6.  Molecular mapping of the RNA Cap 2'-O-methyltransferase activation interface between severe acute respiratory syndrome coronavirus nsp10 and nsp16.

Authors:  Adrien Lugari; Stephane Betzi; Etienne Decroly; Emmanuel Bonnaud; Aurélie Hermant; Jean-Claude Guillemot; Claire Debarnot; Jean-Paul Borg; Mickaël Bouvet; Bruno Canard; Xavier Morelli; Patrick Lécine
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7.  Curation of viral genomes: challenges, applications and the way forward.

Authors:  Urmila Kulkarni-Kale; Shriram G Bhosle; G Sunitha Manjari; Manali Joshi; Sandeep Bansode; Ashok S Kolaskar
Journal:  BMC Bioinformatics       Date:  2006-12-18       Impact factor: 3.169

8.  A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus.

Authors:  Isabelle Imbert; Jean-Claude Guillemot; Jean-Marie Bourhis; Cécile Bussetta; Bruno Coutard; Marie-Pierre Egloff; François Ferron; Alexander E Gorbalenya; Bruno Canard
Journal:  EMBO J       Date:  2006-10-05       Impact factor: 11.598

9.  International research networks in viral structural proteomics: again, lessons from SARS.

Authors:  Bruno Canard; Jeremiah S Joseph; Peter Kuhn
Journal:  Antiviral Res       Date:  2007-11-01       Impact factor: 5.970

10.  Expression, crystallization and preliminary crystallographic study of human coronavirus HKU1 nonstructural protein 9.

Authors:  Wei Wang; Lei Wei; Anqi Yang; Teng He; K Y Yuen; Cheng Chen; Zihe Rao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-04-28
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