Literature DB >> 12925745

Liquid-solid transition in nuclei of protein crystals.

Aleksey Lomakin1, Neer Asherie, George B Benedek.   

Abstract

It is generally assumed that crystallization begins with a small, crystalline nucleus. For proteins this paradigm may not be valid. Our numerical simulations show that under conditions typically used to produce protein crystals, small clusters of model proteins (particles with short-range, attractive interactions) cannot maintain a crystalline structure. Protein crystal nucleation is therefore an indirect, two-step process. A nucleus first forms and grows as a disordered, liquid-like aggregate. Once the aggregate grows beyond a critical size (about a few hundred particles) crystal nucleation becomes possible.

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Year:  2003        PMID: 12925745      PMCID: PMC193547          DOI: 10.1073/pnas.1334069100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Aeolotopic interactions of globular proteins.

Authors:  A Lomakin; N Asherie; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Entropic effects on the size dependence of cluster structure.

Authors:  J P Doye; F Calvo
Journal:  Phys Rev Lett       Date:  2001-04-16       Impact factor: 9.161

3.  Control of protein crystal nucleation around the metastable liquid-liquid phase boundary.

Authors:  O Galkin; P G Vekilov
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

4.  Phase Diagram of Colloidal Solutions.

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Journal:  Phys Rev Lett       Date:  1996-12-02       Impact factor: 9.161

5.  Phase behavior of small attractive colloidal particles.

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Journal:  Phys Rev Lett       Date:  1996-01-01       Impact factor: 9.161

6.  Direct observation of two-dimensional, dynamic clustering and ordering with colloids.

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Journal:  Phys Rev Lett       Date:  1985-07-08       Impact factor: 9.161

7.  Binary-liquid phase separation of lens protein solutions.

Authors:  M L Broide; C R Berland; J Pande; O O Ogun; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

8.  Phase transitions in systems with extremely short-ranged attractions: A density-functional theory.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1995-06-01

9.  Using phase transitions to investigate the effect of salts on protein interactions.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-06

10.  van der Waals theory for solids.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-10
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  14 in total

1.  The molecular basis of distinct aggregation pathways of islet amyloid polypeptide.

Authors:  Lei Wei; Ping Jiang; Weixin Xu; Hai Li; Hua Zhang; Liangyu Yan; Mary B Chan-Park; Xue-Wei Liu; Kai Tang; Yuguang Mu; Konstantin Pervushin
Journal:  J Biol Chem       Date:  2010-12-10       Impact factor: 5.157

2.  Metastable mesoscopic clusters in solutions of sickle-cell hemoglobin.

Authors:  Weichun Pan; Oleg Galkin; Luis Filobelo; Ronald L Nagel; Peter G Vekilov
Journal:  Biophys J       Date:  2006-10-13       Impact factor: 4.033

3.  Phase behavior of an intact monoclonal antibody.

Authors:  Tangir Ahamed; Beatriz N A Esteban; Marcel Ottens; Gijs W K van Dedem; Luuk A M van der Wielen; Marc A T Bisschops; Albert Lee; Christine Pham; Jörg Thömmes
Journal:  Biophys J       Date:  2007-04-20       Impact factor: 4.033

4.  Two-step mechanism of homogeneous nucleation of sickle cell hemoglobin polymers.

Authors:  Oleg Galkin; Weichun Pan; Luis Filobelo; Rhoda Elison Hirsch; Ronald L Nagel; Peter G Vekilov
Journal:  Biophys J       Date:  2007-04-20       Impact factor: 4.033

5.  Phase transitions in human IgG solutions.

Authors:  Ying Wang; Aleksey Lomakin; Ramil F Latypov; Jacob P Laubach; Teru Hideshima; Paul G Richardson; Nikhil C Munshi; Kenneth C Anderson; George B Benedek
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

6.  Altered phase diagram due to a single point mutation in human gammaD-crystallin.

Authors:  Jennifer J McManus; Aleksey Lomakin; Olutayo Ogun; Ajay Pande; Markus Basan; Jayanti Pande; George B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-08       Impact factor: 11.205

7.  Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations.

Authors:  Gabriele C Sosso; Ji Chen; Stephen J Cox; Martin Fitzner; Philipp Pedevilla; Andrea Zen; Angelos Michaelides
Journal:  Chem Rev       Date:  2016-05-26       Impact factor: 60.622

8.  Insulin particle formation in supersaturated aqueous solutions of poly(ethylene glycol).

Authors:  Lev Bromberg; Julia Rashba-Step; Terrence Scott
Journal:  Biophys J       Date:  2005-11       Impact factor: 4.033

9.  Assessing the contribution of heterogeneous distributions of oligomers to aggregation mechanisms of polyglutamine peptides.

Authors:  Andreas Vitalis; Rohit V Pappu
Journal:  Biophys Chem       Date:  2011-04-12       Impact factor: 2.352

Review 10.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

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