Literature DB >> 12917291

Enhancer timing of Hox gene expression: deletion of the endogenous Hoxc8 early enhancer.

Aster H Juan1, Frank H Ruddle.   

Abstract

The proper expression of Hox genes is necessary for the accurate patterning of the body plan. The elucidation of the developmental genetic basis of transcriptional regulation of Hox genes by the study of their cis-regulatory elements provides crucial information regarding the establishment of axial specification. In this report, we investigate the role of the early enhancer (EE) of the murine Hoxc8 gene to better understand its role in pattern formation. Previous reports show that knockouts of the endogenous Hoxc8 coding region result in a combination of neural, behavioral and skeletal phenotypes. In this report, we limit ourselves to a consideration of the skeletal abnormalities. Early reports from our laboratory based on exogenous transgenic reporter constructs implicate a 200 bp non-coding element 3 kb upstream of the Hoxc8 promoter as a crucial enhancer that regulates the transcription of Hoxc8. In the present work, we have deleted this regulatory region from the endogenous genome using embryonic stem cell technology. Our results show that the deletion of the EE results in a significant delay in the temporal expression of Hoxc8. We also show that the deletion of the EE does not eliminate the expression of the Hoxc8 protein, but delays the attainment of control levels of expression and anterior and posterior boundaries of expression on the AP axis. The temporal delay in Hoxc8 expression is sufficient to produce phenocopies of many of the axial skeletal defects associated with the complete absence of Hoxc8 gene product as previously reported for the Hoxc8-null mutation. Our results are consistent with emerging evidence that the precise temporal expression of Hox genes is crucial for the establishment of regional identities. The fact that the EE deletion does not eliminate Hoxc8 expression indicates the existence of a Hoxc8 transcriptional regulatory apparatus independent to some degree of the Hoxc8 EE. In a comparison of our results with those reported previously by others investigating temporal control of Hox gene expression, we have discovered a structural similarity between the Hoxc8 EE reported here and a transcriptional control element located in the Hoxd11 region. We speculate that a distributed system of expression timing control may exist that is similar the one we propose for Hoxc8. Last, our data is consistent with the position that disparate regulatory pathways are responsible for the expression of Hoxc8 in the organogenesis of somites, neural tube and limb bud.

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Year:  2003        PMID: 12917291     DOI: 10.1242/dev.00672

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  17 in total

1.  Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis.

Authors:  Masatoshi Matsunami; Kenta Sumiyama; Naruya Saitou
Journal:  J Mol Evol       Date:  2010-10-28       Impact factor: 2.395

Review 2.  Enhancer identification through comparative genomics.

Authors:  Axel Visel; James Bristow; Len A Pennacchio
Journal:  Semin Cell Dev Biol       Date:  2007-01-05       Impact factor: 7.727

3.  Role of the Chromosome Architectural Factor SMCHD1 in X-Chromosome Inactivation, Gene Regulation, and Disease in Humans.

Authors:  Chen-Yu Wang; Harrison Brand; Natalie D Shaw; Michael E Talkowski; Jeannie T Lee
Journal:  Genetics       Date:  2019-08-16       Impact factor: 4.562

4.  The chromatin insulator CTCF and the emergence of metazoan diversity.

Authors:  Peter Heger; Birger Marin; Marek Bartkuhn; Einhard Schierenberg; Thomas Wiehe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

5.  MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo.

Authors:  Bilal N Sheikh; Natalie L Downer; Belinda Phipson; Hannah K Vanyai; Andrew J Kueh; Davis J McCarthy; Gordon K Smyth; Tim Thomas; Anne K Voss
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-14       Impact factor: 11.205

Review 6.  Signaling gradients during paraxial mesoderm development.

Authors:  Alexander Aulehla; Olivier Pourquié
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

Review 7.  In search of lost time: Enhancers as modulators of timing in lymphocyte development and differentiation.

Authors:  Jonathan M Chu; Nicholas A Pease; Hao Yuan Kueh
Journal:  Immunol Rev       Date:  2021-03-18       Impact factor: 12.988

8.  Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.

Authors:  Aya Pusic; Craig R Stumpf; Nadya Kondrashov; Kunihiko Shimizu; Andrew C Hsieh; Junko Ishijima; Toshihiko Shiroishi; Maria Barna
Journal:  Cell       Date:  2011-04-29       Impact factor: 41.582

Review 9.  Establishment of Hox vertebral identities in the embryonic spine precursors.

Authors:  Tadahiro Iimura; Nicolas Denans; Olivier Pourquié
Journal:  Curr Top Dev Biol       Date:  2009       Impact factor: 4.897

10.  Chromatin insulator and the promoter targeting sequence modulate the timing of long-range enhancer-promoter interactions in the Drosophila embryo.

Authors:  Qing Lin; Lan Lin; Jumin Zhou
Journal:  Dev Biol       Date:  2010-01-04       Impact factor: 3.582

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