Literature DB >> 12915727

Cold adaptation of a psychrophilic chitinase: a mutagenesis study.

K Mavromatis1, G Feller, M Kokkinidis, V Bouriotis.   

Abstract

The gene encoding chitinase ArChiB from the Antarctic Arthrobacter sp. TAD20 has been expressed in Escherichia coli and the recombinant enzyme purified to homogeneity. In an effort to engineer cold-adapted biocatalysts through rational redesign to operate at elevated temperatures, we performed several mutations aiming to increase the rigidity of the molecular edifice of the selected psychrophilic chitinase. The mutations were designed on the basis of a homology-based three-dimensional model of the enzyme, and included an attempt to introduce a salt bridge (mutant N198K) and replacements of selected Gly residues by either Pro (mutants G93P, G254P) or Gln (G406Q). Mutant N198K resulted in a more stable protein (DeltaTm = 0.6 degrees C). Mutant G93P exhibited a DeltaTm of 1.2 degrees C, while mutants G254P and G406Q exhibited decreased stability. We conclude that the effect of mutating Gly residues on enzyme stability is rather complex and can only be understood in the context of the structural environment. Kinetic and spectroscopic analysis of these enzyme variants revealed that the kinetic parameters kcat and Km have been significantly modified.

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Year:  2003        PMID: 12915727     DOI: 10.1093/protein/gzg069

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  11 in total

1.  Site-directed mutagenesis of a family 42 β-galactosidase from an antarctic bacterium.

Authors:  Matthew V Shumway; Peter P Sheridan
Journal:  Int J Biochem Mol Biol       Date:  2012-05-18

Review 2.  Cold-adapted enzymes from marine Antarctic microorganisms.

Authors:  J-C Marx; T Collins; S D'Amico; G Feller; C Gerday
Journal:  Mar Biotechnol (NY)       Date:  2006-12-29       Impact factor: 3.619

3.  Cold-active enzymes studied by comparative molecular dynamics simulation.

Authors:  Vojtech Spiwok; Petra Lipovová; Tereza Skálová; Jarmila Dusková; Jan Dohnálek; Jindrich Hasek; Nicholas J Russell; Blanka Králová
Journal:  J Mol Model       Date:  2007-01-18       Impact factor: 1.810

4.  Function and biotechnology of extremophilic enzymes in low water activity.

Authors:  Ram Karan; Melinda D Capes; Shiladitya Dassarma
Journal:  Aquat Biosyst       Date:  2012-02-02

5.  Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach.

Authors:  Samuel Jacquiod; Laure Franqueville; Sébastien Cécillon; Timothy M Vogel; Pascal Simonet
Journal:  PLoS One       Date:  2013-11-20       Impact factor: 3.240

Review 6.  Discovery, Molecular Mechanisms, and Industrial Applications of Cold-Active Enzymes.

Authors:  Margarita Santiago; César A Ramírez-Sarmiento; Ricardo A Zamora; Loreto P Parra
Journal:  Front Microbiol       Date:  2016-09-09       Impact factor: 5.640

7.  Computational Analysis of Thermal Adaptation in Extremophilic Chitinases: The Achilles' Heel in Protein Structure and Industrial Utilization.

Authors:  Dale L Ang; Mubasher Zahir Hoque; Md Abir Hossain; Gea Guerriero; Roberto Berni; Jean-Francois Hausman; Saleem A Bokhari; Wallace J Bridge; Khawar Sohail Siddiqui
Journal:  Molecules       Date:  2021-01-29       Impact factor: 4.411

8.  Molecular characterization of cold adaptation of membrane proteins in the Vibrionaceae core-genome.

Authors:  Tim Kahlke; Steinar Thorvaldsen
Journal:  PLoS One       Date:  2012-12-17       Impact factor: 3.240

Review 9.  Psychrophilic enzymes: from folding to function and biotechnology.

Authors:  Georges Feller
Journal:  Scientifica (Cairo)       Date:  2013-01-17

10.  Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis.

Authors:  Wah-Seng See-Too; Robson Ee; Yan-Lue Lim; Peter Convey; David A Pearce; Taznim Begam Mohd Mohidin; Wai-Fong Yin; Kok Gan Chan
Journal:  Stand Genomic Sci       Date:  2017-09-06
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