Literature DB >> 12914844

Dipolar Waves as NMR maps of helices in proteins.

Michael F Mesleh1, Stanley J Opella.   

Abstract

Dipolar Waves describe the periodic variation in the magnitudes of dipolar couplings in the backbone of a protein as a function of residue number. They provide a direct link between experimental measurements of dipolar couplings in aligned samples and the periodicity inherent in regular secondary structure elements. It is possible to identify the residues in a helix and the type of helix, deviations from ideality, and to orient the helices relative to an external axis in completely aligned samples and relative to each other in a common frame in weakly aligned samples with Dipolar Waves. They provide a tool for accurately describing helices and a step towards high throughput structure determination of proteins.

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Year:  2003        PMID: 12914844     DOI: 10.1016/s1090-7807(03)00119-8

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  33 in total

1.  Global structure of a DNA three-way junction by solution NMR: towards prediction of 3H fold.

Authors:  Bin Wu; Frederic Girard; Bernd van Buuren; Jürgen Schleucher; Marco Tessari; Sybren Wijmenga
Journal:  Nucleic Acids Res       Date:  2004-06-15       Impact factor: 16.971

Review 2.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

3.  HIV-1 Vpu protein antagonizes innate restriction factor BST-2 via lipid-embedded helix-helix interactions.

Authors:  Mark Skasko; Yan Wang; Ye Tian; Andrey Tokarev; Jason Munguia; Autumn Ruiz; Edward B Stephens; Stanley J Opella; John Guatelli
Journal:  J Biol Chem       Date:  2011-11-09       Impact factor: 5.157

4.  Secondary structure, dynamics, and architecture of the p7 membrane protein from hepatitis C virus by NMR spectroscopy.

Authors:  Gabriel A Cook; Stanley J Opella
Journal:  Biochim Biophys Acta       Date:  2010-08-18

Review 5.  Comparative NMR studies demonstrate profound differences between two viroporins: p7 of HCV and Vpu of HIV-1.

Authors:  Gabriel A Cook; Hua Zhang; Sang Ho Park; Yan Wang; Stanley J Opella
Journal:  Biochim Biophys Acta       Date:  2010-08-18

6.  Correlation of gene and protein structures in the FXYD family proteins.

Authors:  Carla M Franzin; Jinghua Yu; Khang Thai; Jungyuen Choi; Francesca M Marassi
Journal:  J Mol Biol       Date:  2005-10-28       Impact factor: 5.469

7.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

8.  Paramagnetic-based NMR restraints lift residual dipolar coupling degeneracy in multidomain detergent-solubilized membrane proteins.

Authors:  Lei Shi; Nathaniel J Traaseth; Raffaello Verardi; Martin Gustavsson; Jiali Gao; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2011-02-02       Impact factor: 15.419

9.  Conformational changes induced by a single amino acid substitution in the trans-membrane domain of Vpu: implications for HIV-1 susceptibility to channel blocking drugs.

Authors:  Sang Ho Park; Stanley J Opella
Journal:  Protein Sci       Date:  2007-08-31       Impact factor: 6.725

10.  Structural basis of the temperature transition of Pf1 bacteriophage.

Authors:  David S Thiriot; Alexander A Nevzorov; Stanley J Opella
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

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