Literature DB >> 12912847

QAlign: quality-based multiple alignments with dynamic phylogenetic analysis.

M Sammeth1, J Rothgänger, W Esser, J Albert, J Stoye, D Harmsen.   

Abstract

Integrating different alignment strategies, a layout editor and tools deriving phylogenetic trees in a 'multiple alignment environment' helps to investigate and enhance results of multiple sequence alignment by hand. QAlign combines algorithms for fast progressive and accurate simultaneous multiple alignment with a versatile editor and a dynamic phylogenetic analysis in a convenient graphical user interface.

Mesh:

Year:  2003        PMID: 12912847     DOI: 10.1093/bioinformatics/btg197

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Development and evaluation of a quality-controlled ribosomal sequence database for 16S ribosomal DNA-based identification of Staphylococcus species.

Authors:  Karsten Becker; Dag Harmsen; Alexander Mellmann; Christian Meier; Peter Schumann; Georg Peters; Christof von Eiff
Journal:  J Clin Microbiol       Date:  2004-11       Impact factor: 5.948

2.  Multiple nonidentical reductive-dehalogenase-homologous genes are common in Dehalococcoides.

Authors:  Tina Hölscher; Rosa Krajmalnik-Brown; Kirsti M Ritalahti; Friedrich Von Wintzingerode; Helmut Görisch; Frank E Löffler; Lorenz Adrian
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

3.  Evolutionary hierarchies of conserved blocks in 5'-noncoding sequences of dicot rbcS genes.

Authors:  Katie E Weeks; Nadia A Chuzhanova; Iain S Donnison; Ian M Scott
Journal:  BMC Evol Biol       Date:  2007-04-02       Impact factor: 3.260

4.  New measures of topological stability in phylogenetic trees - Taking taxon composition into account.

Authors:  Dirk Krüger; Andrea Gargas
Journal:  Bioinformation       Date:  2006-12-28
  4 in total

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