Literature DB >> 12912843

GenoMap, a circular genome data viewer.

Naoki Sato1, Shigeki Ehira.   

Abstract

A Tcl/Tk-based application called GenoMap is described, a viewer for genome-wide map of microarray expression data within a circular bacterial genome. An interactive interface facilitates easy identification of the expressed region. This software is also used for drawing genome-wide quantitative data.

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Mesh：

Year:  2003        PMID： 12912843     DOI： 10.1093/bioinformatics/btg195

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  15 in total

1.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

2.  Interactive microbial genome visualization with GView.

Authors:  Aaron Petkau; Matthew Stuart-Edwards; Paul Stothard; Gary Van Domselaar
Journal:  Bioinformatics       Date:  2010-10-17       Impact factor: 6.937

3.  Detection and transformation of genome segments that differ within a coastal population of Vibrio cholerae strains.

Authors:  Michael C Miller; Daniel P Keymer; Abigail Avelar; Alexandria B Boehm; Gary K Schoolnik
Journal:  Appl Environ Microbiol       Date:  2007-04-20       Impact factor: 4.792

4.  CompaGB: An open framework for genome browsers comparison.

Authors:  Thomas Lacroix; Valentin Loux; Annie Gendrault; Jean-François Gibrat; Hélène Chiapello
Journal:  BMC Res Notes       Date:  2011-05-04

5.  GenomeViz: visualizing microbial genomes.

Authors:  Rohit Ghai; Torsten Hain; Trinad Chakraborty
Journal:  BMC Bioinformatics       Date:  2004-12-15       Impact factor: 3.169

6.  ProGenExpress: visualization of quantitative data on prokaryotic genomes.

Authors:  Michael Watson
Journal:  BMC Bioinformatics       Date:  2005-04-13       Impact factor: 3.169

7.  The CGView Server: a comparative genomics tool for circular genomes.

Authors:  Jason R Grant; Paul Stothard
Journal:  Nucleic Acids Res       Date:  2008-04-14       Impact factor: 16.971

8.  Transcriptional profile of P. syringae pv. phaseolicola NPS3121 at low temperature: physiology of phytopathogenic bacteria.

Authors:  Jackeline Lizzeta Arvizu-Gómez; Alejandro Hernández-Morales; Juan Ramiro Pacheco Aguilar; Ariel Álvarez-Morales
Journal:  BMC Microbiol       Date:  2013-04-12       Impact factor: 3.605

9.  Genomorama: genome visualization and analysis.

Authors:  Jason D Gans; Murray Wolinsky
Journal:  BMC Bioinformatics       Date:  2007-06-14       Impact factor: 3.169

10.  DNAPlotter: circular and linear interactive genome visualization.

Authors:  Tim Carver; Nick Thomson; Alan Bleasby; Matthew Berriman; Julian Parkhill
Journal:  Bioinformatics       Date:  2008-11-05       Impact factor: 6.937
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