Literature DB >> 12912842

UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons.

Sacha A F T van Hijum1, Anne de Jong, Girbe Buist, Jan Kok, Oscar P Kuipers.   

Abstract

The complementary programs UniFrag and GenomePrimer were developed to provide a reliable high-throughput method to select the most unique regions within genomic DNA sequence(s) and design primers therein, involving minimal user intervention and maximum flexibility.

Mesh：

Substances：

Year:  2003        PMID： 12912842     DOI： 10.1093/bioinformatics/btg203

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  20 in total

1.  A PCR primer bank for quantitative gene expression analysis.

Authors:  Xiaowei Wang; Brian Seed
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

2.  Comparative analyses of prophage-like elements present in two Lactococcus lactis strains.

Authors:  Marco Ventura; Aldert Zomer; Carlos Canchaya; Mary O'Connell-Motherway; Oscar Kuipers; Francesca Turroni; Angela Ribbera; Elena Foroni; Girbe Buist; Udo Wegmann; Claire Shearman; Michael J Gasson; Gerald F Fitzgerald; Jan Kok; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

3.  Time-resolved determination of the CcpA regulon of Lactococcus lactis subsp. cremoris MG1363.

Authors:  Aldert L Zomer; Girbe Buist; Rasmus Larsen; Jan Kok; Oscar P Kuipers
Journal:  J Bacteriol       Date:  2006-10-06       Impact factor: 3.490

4.  Genome sequences of Lactococcus lactis MG1363 (revised) and NZ9000 and comparative physiological studies.

Authors:  Daniel M Linares; Jan Kok; Bert Poolman
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

5.  A parallel and incremental algorithm for efficient unique signature discovery on DNA databases.

Authors:  Hsiao Ping Lee; Tzu-Fang Sheu; Chuan Yi Tang
Journal:  BMC Bioinformatics       Date:  2010-03-16       Impact factor: 3.169

6.  Projector: automatic contig mapping for gap closure purposes.

Authors:  Sacha A F T van Hijum; Aldert L Zomer; Oscar P Kuipers; Jan Kok
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

7.  DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other.

Authors:  Martin Lehnik-Habrink; Leonie Rempeters; Ákos T Kovács; Christoph Wrede; Claudia Baierlein; Heike Krebber; Oscar P Kuipers; Jörg Stülke
Journal:  J Bacteriol       Date:  2012-11-21       Impact factor: 3.490

8.  Transcriptional responses of Bacillus cereus towards challenges with the polysaccharide chitosan.

Authors:  Hilde Mellegård; Ákos T Kovács; Toril Lindbäck; Bjørn E Christensen; Oscar P Kuipers; Per E Granum
Journal:  PLoS One       Date:  2011-09-08       Impact factor: 3.240

9.  Response of Bacillus cereus ATCC 14579 to challenges with sublethal concentrations of enterocin AS-48.

Authors:  María J Grande Burgos; Akos T Kovács; Aleksandra M Mirończuk; Hikmate Abriouel; Antonio Gálvez; Oscar P Kuipers
Journal:  BMC Microbiol       Date:  2009-10-28       Impact factor: 3.605

10.  The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis.

Authors:  Christine Diethmaier; Joseph A Newman; Akos T Kovács; Volkhard Kaever; Christina Herzberg; Cecilia Rodrigues; Mirjam Boonstra; Oscar P Kuipers; Richard J Lewis; Jörg Stülke
Journal:  J Bacteriol       Date:  2013-10-25       Impact factor: 3.490
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.