Literature DB >> 12909337

Regulation of gene expression by stop codon recoding: selenocysteine.

Paul R Copeland1.   

Abstract

The regulation of gene expression at the translational level not only allows for rapid changes in specific protein levels but also provides an opportunity to alter codon specificity. For the incorporation of selenocysteine (Sec) into protein, the UGA codon is transformed from one that signals translation termination to one specific for Sec. This review provides a look at Sec incorporation from the perspective of the individual steps involved in protein synthesis: initiation, elongation and termination. The roles of the factors known to be required for Sec incorporation are considered in the context of each step in translation including structural modeling of the differences between the standard elongation factor eEF1A and the Sec-specific counterpart, eEFSec.

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Year:  2003        PMID: 12909337      PMCID: PMC2820279          DOI: 10.1016/s0378-1119(03)00588-2

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  52 in total

1.  Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha.

Authors:  G R Andersen; L Pedersen; L Valente; I Chatterjee; T G Kinzy; M Kjeldgaard; J Nyborg
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

Review 2.  Selenocysteine incorporation directed from the 3'UTR: characterization of eukaryotic EFsec and mechanistic implications.

Authors:  M J Berry; R M Tujebajeva; P R Copeland; X M Xu; B A Carlson; G W Martin; S C Low; J B Mansell; E Grundner-Culemann; J W Harney; D M Driscoll; D L Hatfield
Journal:  Biofactors       Date:  2001       Impact factor: 6.113

Review 3.  RNA binding proteins and selenocysteine.

Authors:  P R Copeland; D M Driscoll
Journal:  Biofactors       Date:  2001       Impact factor: 6.113

4.  The polypeptide chain release factor eRF1 specifically contacts the s(4)UGA stop codon located in the A site of eukaryotic ribosomes.

Authors:  L Chavatte; L Frolova; L Kisselev; A Favre
Journal:  Eur J Biochem       Date:  2001-05

5.  The selenocysteine incorporation machinery: interactions between the SECIS RNA and the SECIS-binding protein SBP2.

Authors:  J E Fletcher; P R Copeland; D M Driscoll; A Krol
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

6.  Crystal structures of nucleotide exchange intermediates in the eEF1A-eEF1Balpha complex.

Authors:  G R Andersen; L Valente; L Pedersen; T G Kinzy; J Nyborg
Journal:  Nat Struct Biol       Date:  2001-06

7.  A 250-nucleotide UA-rich element in the 3' untranslated region of Xenopus laevis Vg1 mRNA represses translation both in vivo and in vitro.

Authors:  L J Otero; A Devaux; N Standart
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

8.  Interplay between termination and translation machinery in eukaryotic selenoprotein synthesis.

Authors:  E Grundner-Culemann; G W Martin; R Tujebajeva; J W Harney; M J Berry
Journal:  J Mol Biol       Date:  2001-07-20       Impact factor: 5.469

9.  The kink-turn: a new RNA secondary structure motif.

Authors:  D J Klein; T M Schmeing; P B Moore; T A Steitz
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

10.  Translational silencing of ceruloplasmin requires the essential elements of mRNA circularization: poly(A) tail, poly(A)-binding protein, and eukaryotic translation initiation factor 4G.

Authors:  B Mazumder; V Seshadri; H Imataka; N Sonenberg; P L Fox
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

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  30 in total

Review 1.  Inherited defects of thyroid hormone metabolism.

Authors:  A M Dumitrescu; S Refetoff
Journal:  Ann Endocrinol (Paris)       Date:  2011-04-21       Impact factor: 2.478

2.  Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

Authors:  Alexander Stark; Michael F Lin; Pouya Kheradpour; Jakob S Pedersen; Leopold Parts; Joseph W Carlson; Madeline A Crosby; Matthew D Rasmussen; Sushmita Roy; Ameya N Deoras; J Graham Ruby; Julius Brennecke; Emily Hodges; Angie S Hinrichs; Anat Caspi; Benedict Paten; Seung-Won Park; Mira V Han; Morgan L Maeder; Benjamin J Polansky; Bryanne E Robson; Stein Aerts; Jacques van Helden; Bassem Hassan; Donald G Gilbert; Deborah A Eastman; Michael Rice; Michael Weir; Matthew W Hahn; Yongkyu Park; Colin N Dewey; Lior Pachter; W James Kent; David Haussler; Eric C Lai; David P Bartel; Gregory J Hannon; Thomas C Kaufman; Michael B Eisen; Andrew G Clark; Douglas Smith; Susan E Celniker; William M Gelbart; Manolis Kellis
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

Review 3.  Threading the needle: getting selenocysteine into proteins.

Authors:  Jesse Donovan; Paul R Copeland
Journal:  Antioxid Redox Signal       Date:  2010-04-01       Impact factor: 8.401

4.  Specific antioxidant selenoproteins are induced in the heart during hypertrophy.

Authors:  FuKun W Hoffmann; Ann S Hashimoto; Byung Cheon Lee; Aaron H Rose; Ralph V Shohet; Peter R Hoffmann
Journal:  Arch Biochem Biophys       Date:  2011-05-20       Impact factor: 4.013

5.  Neuro- and nephrotoxicity of subchronic cadmium chloride exposure and the potential chemoprotective effects of selenium nanoparticles.

Authors:  Kadry M Sadek; Mohamed A Lebda; Tarek K Abouzed; Sherif M Nasr; Moustafa Shoukry
Journal:  Metab Brain Dis       Date:  2017-06-28       Impact factor: 3.584

6.  The efficiency of selenocysteine incorporation is regulated by translation initiation factors.

Authors:  Jesse Donovan; Paul R Copeland
Journal:  J Mol Biol       Date:  2010-05-19       Impact factor: 5.469

7.  Clinical and molecular characterization of a novel selenocysteine insertion sequence-binding protein 2 (SBP2) gene mutation (R128X).

Authors:  Caterina Di Cosmo; Neil McLellan; Xiao-Hui Liao; Kum Kum Khanna; Roy E Weiss; Laura Papp; Samuel Refetoff
Journal:  J Clin Endocrinol Metab       Date:  2009-07-14       Impact factor: 5.958

8.  Functional analysis of the interplay between translation termination, selenocysteine codon context, and selenocysteine insertion sequence-binding protein 2.

Authors:  Malavika Gupta; Paul R Copeland
Journal:  J Biol Chem       Date:  2007-10-22       Impact factor: 5.157

Review 9.  Size matters: a view of selenocysteine incorporation from the ribosome.

Authors:  K Caban; P R Copeland
Journal:  Cell Mol Life Sci       Date:  2006-01       Impact factor: 9.261

Review 10.  The syndrome of inherited partial SBP2 deficiency in humans.

Authors:  Alexandra M Dumitrescu; Caterina Di Cosmo; Xiao-Hui Liao; Roy E Weiss; Samuel Refetoff
Journal:  Antioxid Redox Signal       Date:  2010-04-01       Impact factor: 8.401

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