Literature DB >> 12898222

The gyr genes of Salmonella enterica serovar Typhimurium are repressed by the factor for inversion stimulation, Fis.

O M Keane1, C J Dorman.   

Abstract

The DNA sequence of the gyr genes from Salmonella enterica serovar Typhimurium revealed strong similarity between gyrB and its counterpart in Escherichia coli. However, the gyrA gene showed similarity to the E. coli homologue only downstream from the Pribnow box of the promoter, with the sequence upstream diverging markedly. Since this region encompasses the binding sites for the Fis DNA binding protein in E. coli, we investigated the possibility that the gyrA genes in the two species might differ in their responses to this regulatory protein. Fis was found to act as a transcriptional repressor of both gyr genes in S. enterica. In electrophoretic mobility shift assays, Fis was found to bind to both the gyrA and gyrB promoters of S. enterica, despite the strong divergence from the E. coli sequence on the part of the former. The binding sites were mapped by DNase I protection assays, and the results are consistent with conservation of the mechanism of Fis-mediated repression between the two bacterial species.

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Year:  2003        PMID: 12898222     DOI: 10.1007/s00438-003-0896-1

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  24 in total

1.  FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter.

Authors:  Iain K Pemberton; Georgi Muskhelishvili; Andrew A Travers; Malcolm Buckle
Journal:  J Mol Biol       Date:  2002-05-03       Impact factor: 5.469

Review 2.  Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium.

Authors:  N L Sternberg; R Maurer
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

3.  The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli.

Authors:  H Gille; J B Egan; A Roth; W Messer
Journal:  Nucleic Acids Res       Date:  1991-08-11       Impact factor: 16.971

4.  Involvement of Fis protein in replication of the Escherichia coli chromosome.

Authors:  M Filutowicz; W Ross; J Wild; R L Gourse
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

5.  Mutations in the -10 TATAAT sequence of the gyrA promoter affect both promoter strength and sensitivity to DNA supercoiling.

Authors:  R Straney; R Krah; R Menzel
Journal:  J Bacteriol       Date:  1994-10       Impact factor: 3.490

6.  Functional determinants of the Escherichia coli fis promoter: roles of -35, -10, and transcription initiation regions in the response to stringent control and growth phase-dependent regulation.

Authors:  K A Walker; C L Atkins; R Osuna
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

7.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

8.  Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters.

Authors:  R Menzel; M Gellert
Journal:  Proc Natl Acad Sci U S A       Date:  1987-06       Impact factor: 11.205

9.  FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli.

Authors:  R Schneider; A Travers; G Muskhelishvili
Journal:  Mol Microbiol       Date:  1997-11       Impact factor: 3.501

10.  Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid.

Authors:  T Ali Azam; A Iwata; A Nishimura; S Ueda; A Ishihama
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

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  17 in total

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Review 2.  Organization of supercoil domains and their reorganization by transcription.

Authors:  Shuang Deng; Richard A Stein; N Patrick Higgins
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

3.  The Haemophilus ducreyi Fis protein is involved in controlling expression of the lspB-lspA2 operon and other virulence factors.

Authors:  Maria Labandeira-Rey; Dana A Dodd; Chad A Brautigam; Kate R Fortney; Stanley M Spinola; Eric J Hansen
Journal:  Infect Immun       Date:  2013-08-26       Impact factor: 3.441

4.  Characterization of the nucleoid-associated protein YejK.

Authors:  Chong Lee; Kenneth J Marians
Journal:  J Biol Chem       Date:  2013-09-16       Impact factor: 5.157

5.  Fis regulates transcriptional induction of RpoS in Salmonella enterica.

Authors:  Matthew Hirsch; Thomas Elliott
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

6.  Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation.

Authors:  Matthew D Rolfe; Christopher J Rice; Sacha Lucchini; Carmen Pin; Arthur Thompson; Andrew D S Cameron; Mark Alston; Michael F Stringer; Roy P Betts; József Baranyi; Michael W Peck; Jay C D Hinton
Journal:  J Bacteriol       Date:  2011-12-02       Impact factor: 3.490

7.  Role of decreased levels of Fis histone-like protein in Crohn's disease-associated adherent invasive Escherichia coli LF82 bacteria interacting with intestinal epithelial cells.

Authors:  Sylvie Miquel; Laurent Claret; Richard Bonnet; Imen Dorboz; Nicolas Barnich; Arlette Darfeuille-Michaud
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

8.  Chromosomal position shift of a regulatory gene alters the bacterial phenotype.

Authors:  Veneta Gerganova; Michael Berger; Elisabed Zaldastanishvili; Patrick Sobetzko; Corinne Lafon; Michael Mourez; Andrew Travers; Georgi Muskhelishvili
Journal:  Nucleic Acids Res       Date:  2015-07-13       Impact factor: 16.971

9.  Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?

Authors:  Marcel Geertz; Andrew Travers; Sanja Mehandziska; Patrick Sobetzko; Sarath Chandra-Janga; Nobuo Shimamoto; Georgi Muskhelishvili
Journal:  MBio       Date:  2011-08-02       Impact factor: 7.867

Review 10.  Bacterial DNA topology and infectious disease.

Authors:  Charles J Dorman; Colin P Corcoran
Journal:  Nucleic Acids Res       Date:  2008-12-10       Impact factor: 16.971

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