Literature DB >> 12893179

Histone deposition and chromatin assembly by RSF.

Alejandra Loyola1, Danny Reinberg.   

Abstract

It is becoming clear that the structure of cellular chromatin is dynamic and capable of undergoing rapid changes to respond to the metabolic requirements of the cell. These changes have a direct impact on gene expression and, therefore, the chromatin context must be considered when biochemical reactions that involve DNA are studied. Over the past several decades, a number of methods for assembling chromatin in vitro have been described. Some of them use chemical compounds to deposit histone octamers onto the DNA. Others take advantage of cellular protein complexes that have the ability to assemble chromatin. Some of these complexes have been identified and purified. This article focuses on one of these factors, RSF (remodeling and spacing factor), which was identified in our laboratory. We describe how the chromatin assembly reaction is performed and how it can be monitored to evaluate its efficiency.

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Year:  2003        PMID: 12893179     DOI: 10.1016/s1046-2023(03)00093-8

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  14 in total

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Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

2.  Methods to identify and functionally analyze factors that specifically recognize histone lysine methylation.

Authors:  Robert J Sims; Patrick Trojer; Guohong Li; Danny Reinberg
Journal:  Methods       Date:  2006-12       Impact factor: 3.608

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Authors:  Gary LeRoy; Brenden Rickards; S J Flint
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4.  Evidence that nucleosomes inhibit mismatch repair in eukaryotic cells.

Authors:  Feng Li; Lei Tian; Liya Gu; Guo-Min Li
Journal:  J Biol Chem       Date:  2009-10-05       Impact factor: 5.157

5.  A simple and versatile system for the ATP-dependent assembly of chromatin.

Authors:  Mai T Khuong; Jia Fei; Grisel Cruz-Becerra; James T Kadonaga
Journal:  J Biol Chem       Date:  2017-10-05       Impact factor: 5.157

6.  Nucleolin is required for RNA polymerase I transcription in vivo.

Authors:  Brenden Rickards; S J Flint; Michael D Cole; Gary LeRoy
Journal:  Mol Cell Biol       Date:  2006-11-27       Impact factor: 4.272

7.  Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast carcinogenesis.

Authors:  Lei Shi; Luyang Sun; Qian Li; Jing Liang; Wenhua Yu; Xia Yi; Xiaohan Yang; Yanyan Li; Xiao Han; Yu Zhang; Chenghao Xuan; Zhi Yao; Yongfeng Shang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

8.  Guanine-specific DNA damage induced by gamma-irradiated histone.

Authors:  Ayako Furukawa; Yusuke Hiraku; Shinji Oikawa; Catherine Luxford; Michael J Davies; Shosuke Kawanishi
Journal:  Biochem J       Date:  2005-06-15       Impact factor: 3.857

9.  The multifunctional histone-like protein Lsr2 protects mycobacteria against reactive oxygen intermediates.

Authors:  R Colangeli; A Haq; V L Arcus; E Summers; R S Magliozzo; A McBride; A K Mitra; M Radjainia; A Khajo; W R Jacobs; P Salgame; D Alland
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

10.  Mechanisms Underlying Acrolein-Mediated Inhibition of Chromatin Assembly.

Authors:  Lei Fang; Danqi Chen; Clinton Yu; Hongjie Li; Jason Brocato; Lan Huang; Chunyuan Jin
Journal:  Mol Cell Biol       Date:  2016-11-14       Impact factor: 4.272

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