Literature DB >> 12888339

Chemical cross-linking and mass spectrometry for protein structural modeling.

Jaap Willem Back1, Luitzen de Jong, Anton O Muijsers, Chris G de Koster.   

Abstract

The growth of gene and protein sequence information is currently so rapid that three-dimensional structural information is lacking for the overwhelming majority of known proteins. In this review, efforts towards rapid and sensitive methods for protein structural characterization are described, complementing existing technologies. Based on chemical cross-linking and offering the analytical speed and sensitivity of mass spectrometry these methodologies are thought to contribute valuable tools towards future high throughput protein structure elucidation.

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Year:  2003        PMID： 12888339     DOI： 10.1016/s0022-2836(03)00721-6

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


  81 in total

1.  New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry.

Authors:  Jiawei Chen; Weidong Cui; Daryl Giblin; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

2.  In vivo application of photocleavable protein interaction reporter technology.

Authors:  Li Yang; Chunxiang Zheng; Chad R Weisbrod; Xiaoting Tang; Gerhard R Munske; Michael R Hoopmann; Jimmy K Eng; James E Bruce
Journal:  J Proteome Res       Date:  2012-01-09       Impact factor: 4.466

3.  Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry.

Authors:  Feixia Chu; Shu-ou Shan; Demetri T Moustakas; Frank Alber; Pascal F Egea; Robert M Stroud; Peter Walter; Alma L Burlingame
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-16       Impact factor: 11.205

4.  StavroX--a software for analyzing crosslinked products in protein interaction studies.

Authors:  Michael Götze; Jens Pettelkau; Sabine Schaks; Konstanze Bosse; Christian H Ihling; Fabian Krauth; Romy Fritzsche; Uwe Kühn; Andrea Sinz
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-25       Impact factor: 3.109

5.  Use of proteinase K nonspecific digestion for selective and comprehensive identification of interpeptide cross-links: application to prion proteins.

Authors:  Evgeniy V Petrotchenko; Jason J Serpa; Darryl B Hardie; Mark Berjanskii; Bow P Suriyamongkol; David S Wishart; Christoph H Borchers
Journal:  Mol Cell Proteomics       Date:  2012-03-21       Impact factor: 5.911

6.  A simple procedure to evaluate the efficiency of bio-macromolecular rigid-body refinement by small-angle scattering.

Authors:  Frank Gabel
Journal:  Eur Biophys J       Date:  2011-09-24       Impact factor: 1.733

7.  False discovery rate estimation for cross-linked peptides identified by mass spectrometry.

Authors:  Thomas Walzthoeni; Manfred Claassen; Alexander Leitner; Franz Herzog; Stefan Bohn; Friedrich Förster; Martin Beck; Ruedi Aebersold
Journal:  Nat Methods       Date:  2012-07-08       Impact factor: 28.547

8.  How far can we go with structural mass spectrometry of protein complexes?

Authors:  Michal Sharon
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-04       Impact factor: 3.109

9.  Traveling-wave ion mobility mass spectrometry analysis of isomeric modified peptides arising from chemical cross-linking.

Authors:  Luiz F A Santos; Amadeu H Iglesias; Eduardo J Pilau; Alexandre F Gomes; Fabio C Gozzo
Journal:  J Am Soc Mass Spectrom       Date:  2010-09-21       Impact factor: 3.109

10.  Bifunctional cross-linking approaches for mass spectrometry-based investigation of nucleic acids and protein-nucleic acid assemblies.

Authors:  M Scalabrin; S M Dixit; M M Makshood; C E Krzemien; Daniele Fabris
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608
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