Literature DB >> 12877877

Catalysis of decarboxylation by an adjacent negative charge: a theoretical approach.

Ngoc Lien Tran1, Michael E Colvin, Scott Gronert, Weiming Wu.   

Abstract

We have calculated the rate acceleration in decarboxylation reactions that can be accomplished by charge-charge repulsion between the substrate carboxylate and an adjacent negative charge in media of various dielectric constants. It has been shown that a full negative charge or surrounding partial negative charges will have the same effect. It is concluded that the rate of decarboxylation could be greatly accelerated by the presence of a negative charge nearby. For example, in media with dielectric constants from 5.62 to 20.7, a 10(8)-fold rate acceleration could be achieved by a negative charge placed 3.77 A away from the substrate carboxylate group. However, pK(a) perturbation on two carboxylate groups at close proximity may limit the extent of catalysis. It should also be noted that the extent of catalysis does not change much when the dielectric constant varies from 5.62 to 20.7.

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Year:  2003        PMID: 12877877     DOI: 10.1016/s0045-2068(03)00028-2

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  3 in total

1.  One-carbon chemistry of oxalate oxidoreductase captured by X-ray crystallography.

Authors:  Marcus I Gibson; Percival Yang-Ting Chen; Aileen C Johnson; Elizabeth Pierce; Mehmet Can; Stephen W Ragsdale; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Catalysis in Enzymatic Decarboxylations: Comparison of Selected Cofactor-dependent and Cofactor-independent Examples.

Authors:  Frank Jordan; Hetalben Patel
Journal:  ACS Catal       Date:  2013-07-05       Impact factor: 13.084

3.  Orotic acid decarboxylation in water and nonpolar solvents: a potential role for desolvation in the action of OMP decarboxylase.

Authors:  Charles A Lewis; Richard Wolfenden
Journal:  Biochemistry       Date:  2009-09-15       Impact factor: 3.162

  3 in total

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