Literature DB >> 12876346

Phasing protein structures using the group-subgroup relation.

Luigi Di Costanzo1, Federico Forneris, Silvano Geremia, Lucio Randaccio.   

Abstract

Diffraction data from two non-isomorphous crystals (forms 1 and 2) of an artificial protein with a four-helix bundle motif, di-Co(II)-DF1-L13A, have been collected using synchrotron radiation. The phase of form 1 has been assigned using the group and minimal non-isomorphic supergroup relation between the space group of the previously determined di-Mn(II)-DF1-L13G structure and the space group of this form. This unconventional method of solving the phase problem has also been tested with form 2 using a reverse relation. The structure of the latter form has been solved using the group and maximal non-isomorphic subgroup relation with the space group of form 2 of the analogous dimanganese protein. This application has shown that this phasing method can be used for solving the protein structures of polymorphic crystals as an alternative to the molecular-replacement method.

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Year:  2003        PMID: 12876346     DOI: 10.1107/s0907444903012538

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  3 in total

1.  A case of structure determination using pseudosymmetry.

Authors:  Sergei Radaev; Johnson Agniswamy; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-11-17

2.  Carbamylation of N-terminal proline.

Authors:  Folasade M Olajuyigbe; Nicola Demitri; Joshua O Ajele; Elisa Maurizio; Lucio Randaccio; Silvano Geremia
Journal:  ACS Med Chem Lett       Date:  2010-06-02       Impact factor: 4.345

3.  Surprises and pitfalls arising from (pseudo)symmetry.

Authors:  Peter H Zwart; Ralf W Grosse-Kunstleve; Andrey A Lebedev; Garib N Murshudov; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  3 in total

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