Literature DB >> 12876345

SAD phasing with triiodide, softer X-rays and some help from radiation damage.

Gwyndaf Evans1, Maurizio Polentarutti, Kristina Djinovic Carugo, Gérard Bricogne.   

Abstract

SAD data on a triiodide derivative of porcine pancreatic elastase have been recorded from a single sample using 2.0 A wavelength X-rays. The large anomalous signal of iodine at this wavelength allowed the detection of heavy-atom sites and subsequent structure determination using low-redundancy data. Substantial radiation damage was observed during the measurements and this prevented the merging together of all data. However, a straightforward treatment of the radiation effects on the heavy-atom model during parameter refinement resulted in additional phase information being gleaned from the observed reduction in iodine occupancy factors, which in turn produced a significant improvement in the quality of the electron-density map.

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Year:  2003        PMID: 12876345     DOI: 10.1107/s0907444903012526

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

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Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

2.  'Broken symmetries' in macromolecular crystallography: phasing from unmerged data.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

3.  Additional phase information from UV damage of selenomethionine labelled proteins.

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4.  The structure and regulation of human muscle α-actinin.

Authors:  Euripedes de Almeida Ribeiro; Nikos Pinotsis; Andrea Ghisleni; Anita Salmazo; Petr V Konarev; Julius Kostan; Björn Sjöblom; Claudia Schreiner; Anton A Polyansky; Eirini A Gkougkoulia; Mark R Holt; Finn L Aachmann; Bojan Zagrović; Enrica Bordignon; Katharina F Pirker; Dmitri I Svergun; Mathias Gautel; Kristina Djinović-Carugo
Journal:  Cell       Date:  2014-11-26       Impact factor: 41.582

5.  Facilitating best practices in collecting anomalous scattering data for de novo structure solution at the ESRF Structural Biology Beamlines.

Authors:  Daniele de Sanctis; Marcus Oscarsson; Alexander Popov; Olof Svensson; Gordon Leonard
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

6.  Radiation-damage-induced phasing: a case study using UV irradiation with light-emitting diodes.

Authors:  Daniele de Sanctis; Chloe Zubieta; Franck Felisaz; Hugo Caserotto; Max H Nanao
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

  6 in total

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