Literature DB >> 12874112

Insulator and silencer sequences in the imprinted region of human chromosome 11p15.5.

Minjie Du1, Linda G Beatty, Wenjing Zhou, Jocelyne Lew, Christopher Schoenherr, Rosanna Weksberg, Paul D Sadowski.   

Abstract

The imprinting of the genes on human chromosome 11p15.5 is thought to be controlled by two imprinting control regions located in two differentially methylated CpG islands upstream of the H19 gene (H19 DMR) and in intron 10 of the KCNQ1 gene (KvDMR). We have examined sequences in the human 11p15.5 genomic imprinted region for the presence of insulators and silencers using a position- and enhancer-dependent stable transfection assay. We have confirmed the existence of insulators in H19 DMR and discovered two novel insulators in the IGF2 gene. We have also found two novel silencer sequences; one is located in KvDMR, a region that is thought to contain the promoter for the KCNQ1OT1 transcript, and another is in the CDKN1C gene. We have demonstrated binding of CTCF protein in vitro to all the insulator and silencer sequences that we have detected. We discuss the differences in the regulation of imprinting controlled by the two imprinting control regions in chromosome 11p.

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Year:  2003        PMID: 12874112     DOI: 10.1093/hmg/ddg194

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  28 in total

1.  An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region.

Authors:  Noopur Thakur; Vijay Kumar Tiwari; Helene Thomassin; Radha Raman Pandey; Meena Kanduri; Anita Göndör; Thierry Grange; Rolf Ohlsson; Chandrasekhar Kanduri
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

2.  Developmental profile of H19 differentially methylated domain (DMD) deletion alleles reveals multiple roles of the DMD in regulating allelic expression and DNA methylation at the imprinted H19/Igf2 locus.

Authors:  Joanne L Thorvaldsen; Andrew M Fedoriw; Son Nguyen; Marisa S Bartolomei
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

3.  The CTCF insulator protein is posttranslationally modified by SUMO.

Authors:  Melissa J MacPherson; Linda G Beatty; Wenjing Zhou; Minjie Du; Paul D Sadowski
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

4.  Nonallelic transcriptional roles of CTCF and cohesins at imprinted loci.

Authors:  Shu Lin; Anne C Ferguson-Smith; Richard M Schultz; Marisa S Bartolomei
Journal:  Mol Cell Biol       Date:  2011-05-31       Impact factor: 4.272

5.  Mutated beta-catenin evades a microRNA-dependent regulatory loop.

Authors:  Angelo Veronese; Rosa Visone; Jessica Consiglio; Mario Acunzo; Laura Lupini; Taewan Kim; Manuela Ferracin; Francesca Lovat; Elena Miotto; Veronica Balatti; Lucilla D'Abundo; Laura Gramantieri; Luigi Bolondi; Yuri Pekarsky; Danilo Perrotti; Massimo Negrini; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Evolution of the Beckwith-Wiedemann syndrome region in vertebrates.

Authors:  Martina Paulsen; Tarang Khare; Christopher Burgard; Sascha Tierling; Jörn Walter
Journal:  Genome Res       Date:  2004-12-08       Impact factor: 9.043

7.  DNA methylation of imprinted gene control regions in the regression of low-grade cervical lesions.

Authors:  Ayodele Gomih; Jennifer S Smith; Kari E North; Michael G Hudgens; Wendy R Brewster; Zhiqing Huang; David Skaar; Fidel Valea; Rex C Bentley; Adriana C Vidal; Rachel L Maguire; Randy L Jirtle; Susan K Murphy; Cathrine Hoyo
Journal:  Int J Cancer       Date:  2018-03-30       Impact factor: 7.396

8.  Allele-specific binding of CTCF to the multipartite imprinting control region KvDMR1.

Authors:  Galina V Fitzpatrick; Elena M Pugacheva; Jong-Yeon Shin; Ziedulla Abdullaev; Youwen Yang; Kavita Khatod; Victor V Lobanenkov; Michael J Higgins
Journal:  Mol Cell Biol       Date:  2007-01-22       Impact factor: 4.272

9.  Alternative mechanisms associated with silencing of CDKN1C in Beckwith-Wiedemann syndrome.

Authors:  N Diaz-Meyer; Y Yang; S N Sait; E R Maher; M J Higgins
Journal:  J Med Genet       Date:  2005-08       Impact factor: 6.318

10.  Phylogenetic footprint analysis of IGF2 in extant mammals.

Authors:  Jennifer R Weidman; Susan K Murphy; Catherine M Nolan; Fred S Dietrich; Randy L Jirtle
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

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