Literature DB >> 12868611

Modular assembly of genes and the evolution of new functions.

László Patthy1.   

Abstract

Modular assembly of novel genes from existing genes has long been thought to be an important source of evolutionary novelty. Thanks to major advances in genomic studies it has now become clear that this mechanism contributed significantly to the evolution of novel biological functions in different evolutionary lineages. Analyses of completely sequenced bacterial, archaeal and eukaryotic genomes has revealed that modular assembly of novel constituents of various eukaryotic intracellular signalling pathways played a major role in the evolution of eukaryotes. Comparison of the genomes of single-celled eukaryotes, multicellular plants and animals has also shown that the evolution of multicellularity was accompanied by the assembly of numerous novel extracellular matrix proteins and extracellular signalling proteins that are absolutely essential for multicellularity. There is now strong evidence that exon-shuffling played a general role in the assembly of the modular proteins involved in extracellular communications of metazoa. Although some of these proteins seem to be shared by all major groups of metazoa, others are restricted to certain evolutionary lineages. The genomic features of the chordates appear to have favoured intronic recombination as evidenced by the fact that exon-shuffling continued to be a major source of evolutionary novelty during vertebrate evolution.

Mesh:

Substances:

Year:  2003        PMID: 12868611

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  64 in total

1.  Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster.

Authors:  Rebekah L Rogers; Trevor Bedford; Ana M Lyons; Daniel L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Dominant gain-of-function mutations in Hsp104p reveal crucial roles for the middle region.

Authors:  Eric C Schirmer; Oliver R Homann; Anthony S Kowal; Susan Lindquist
Journal:  Mol Biol Cell       Date:  2004-02-20       Impact factor: 4.138

3.  Identification of genomic features using microsyntenies of domains: domain teams.

Authors:  Sophie Pasek; Anne Bergeron; Jean-Loup Risler; Alexandra Louis; Emmanuelle Ollivier; Mathieu Raffinot
Journal:  Genome Res       Date:  2005-05-17       Impact factor: 9.043

4.  Universal sharing patterns in proteomes and evolution of protein fold architecture and life.

Authors:  Gustavo Caetano-Anollés; Derek Caetano-Anollés
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

5.  Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins.

Authors:  Maria Dulcetti Vibranovski; Noboru Jo Sakabe; Rodrigo Soares de Oliveira; Sandro José de Souza
Journal:  J Mol Evol       Date:  2005-07-18       Impact factor: 2.395

Review 6.  Matrix proteins in the outer shells of molluscs.

Authors:  Cen Zhang; Rongqing Zhang
Journal:  Mar Biotechnol (NY)       Date:  2006-04-18       Impact factor: 3.619

7.  Evolution of protein domain promiscuity in eukaryotes.

Authors:  Malay Kumar Basu; Liran Carmel; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2008-01-29       Impact factor: 9.043

8.  Domain shuffling and the evolution of vertebrates.

Authors:  Takeshi Kawashima; Shuichi Kawashima; Chisaki Tanaka; Miho Murai; Masahiko Yoneda; Nicholas H Putnam; Daniel S Rokhsar; Minoru Kanehisa; Nori Satoh; Hiroshi Wada
Journal:  Genome Res       Date:  2009-05-14       Impact factor: 9.043

9.  Domain mobility in proteins: functional and evolutionary implications.

Authors:  Malay Kumar Basu; Eugenia Poliakov; Igor B Rogozin
Journal:  Brief Bioinform       Date:  2009-01-16       Impact factor: 11.622

10.  Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis.

Authors:  Jitendra Kumar Thakur; Pinky Agarwal; Swarup Parida; Deepak Bajaj; Richa Pasrija
Journal:  Mol Genet Genomics       Date:  2013-06-12       Impact factor: 3.291

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