Literature DB >> 12868112

Alcohols, ethers, carbohydrates, and related compounds. III. The 1,2-dimethoxyethane system.

Jenn-Huei Lii1, Kuo-Hsiang Chen, T Bruce Grindley, Norman L Allinger.   

Abstract

Ethylene glycol, its dimethyl ether, and some related compounds have been studied using the MM4 molecular mechanics force field. The MM4 calculated structural and energetic results have been brought into satisfactory agreement with a considerable number of experimental data and MP2/6-311++G(2d,2p) ab initio calculations. The heats of formation of these compounds are also well calculated. The MM4 ethylene glycol conformations in particular are in good agreement, both geometrically and in terms of energy, with those from the ab initio calculations. The corresponding dimethyl ether is of special interest, because it has been suggested that the trans-gauche conformation is unusually stable due to the hydrogen bonding of a hydrogen on a methyl group with the more distant oxygen. It is shown in the present work that while this conformation is more stable than might have been expected, the energy is adequately calculated by MM4 without using any hydrogen bonding between the Cbond;H bond and the oxygen. If such hydrogen bonding occurs, it amounts to no more than about 0.5 kcal/mol in energy, and is too small to detect with certainty. Additionally, energetic relationships in trans-1,2-dimethoxycyclohexane, 1,3,5,7-tetraoxadecalin, and 3-methoxytetrahydropyran have been studied, and the calculated results are compared with experimental information, which is adequately reproduced. Copyright 2003 Wiley Periodicals, Inc. J Comput Chem 24: 1490-1503, 2003

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Year:  2003        PMID: 12868112     DOI: 10.1002/jcc.10270

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  6 in total

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2.  Selenoglycosides in silico: ab initio-derived reparameterization of MM4, conformational analysis using histo-blood group ABH antigens and lectin docking as indication for potential of bioactivity.

Authors:  Francesco Strino; Jenn-Huei Lii; Chaitanya A K Koppisetty; Per-Georg Nyholm; Hans-Joachim Gabius
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Review 3.  Metal Ion Modeling Using Classical Mechanics.

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Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

Review 4.  Molecular simulations of carbohydrates and protein-carbohydrate interactions: motivation, issues and prospects.

Authors:  Elisa Fadda; Robert J Woods
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5.  The effect of electrostatic interactions on conformational equilibria of multiply substituted tetrahydropyran oxocarbenium ions.

Authors:  Michael T Yang; K A Woerpel
Journal:  J Org Chem       Date:  2009-01-16       Impact factor: 4.354

6.  Conformational analysis of thioglycoside derivatives of histo-blood group ABH antigens using an ab initio-derived reparameterization of MM4: implications for design of non-hydrolysable mimetics.

Authors:  Francesco Strino; Jenn-Huei Lii; Hans-Joachim Gabius; Per-Georg Nyholm
Journal:  J Comput Aided Mol Des       Date:  2009-09-15       Impact factor: 3.686

  6 in total

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