Literature DB >> 12866403

Identification and correction of spurious spatial correlations in microarray data.

Jiang Qian1, Yuval Kluger, Haiyuan Yu, Mark Gerstein.   

Abstract

Mesh：

Year:  2003        PMID： 12866403     DOI： 10.2144/03351bm03

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


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  14 in total

1.  The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Authors:  Blake C Meyers; Shivakundan Singh Tej; Tam H Vu; Christian D Haudenschild; Vikas Agrawal; Steve B Edberg; Hassan Ghazal; Shannon Decola
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

Review 2.  Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Authors:  Thomas E Royce; Joel S Rozowsky; Paul Bertone; Manoj Samanta; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark Gerstein
Journal:  Trends Genet       Date:  2005-08       Impact factor: 11.639

3.  Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.

Authors:  Chang F Quo; Chanchala Kaddi; John H Phan; Amin Zollanvari; Mingqing Xu; May D Wang; Gil Alterovitz
Journal:  Brief Bioinform       Date:  2012-07       Impact factor: 11.622

4.  Genotypic and physiological characterization of Saccharomyces boulardii, the probiotic strain of Saccharomyces cerevisiae.

Authors:  Laura Edwards-Ingram; Paul Gitsham; Nicola Burton; Geoff Warhurst; Ian Clarke; David Hoyle; Stephen G Oliver; Lubomira Stateva
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

5.  SimArray: a user-friendly and user-configurable microarray design tool.

Authors:  Richard P Auburn; Roslin R Russell; Bettina Fischer; Lisa A Meadows; Santiago Sevillano Matilla; Steven Russell
Journal:  BMC Bioinformatics       Date:  2006-03-01       Impact factor: 3.169

6.  Quality assessment of microarrays: visualization of spatial artifacts and quantitation of regional biases.

Authors:  Mark Reimers; John N Weinstein
Journal:  BMC Bioinformatics       Date:  2005-07-01       Impact factor: 3.169

7.  ProCAT: a data analysis approach for protein microarrays.

Authors:  Xiaowei Zhu; Mark Gerstein; Michael Snyder
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

8.  Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool.

Authors:  Haiyuan Yu; Katherine Nguyen; Tom Royce; Jiang Qian; Kenneth Nelson; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2006-12-07       Impact factor: 16.971

9.  Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.

Authors:  Srinka Ghosh; Heather A Hirsch; Edward Sekinger; Kevin Struhl; Thomas R Gingeras
Journal:  BMC Bioinformatics       Date:  2006-10-05       Impact factor: 3.169

Review 10.  Comparing protein abundance and mRNA expression levels on a genomic scale.

Authors:  Dov Greenbaum; Christopher Colangelo; Kenneth Williams; Mark Gerstein
Journal:  Genome Biol       Date:  2003-08-29       Impact factor: 13.583
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