Carbonic anhydrase-9 expression levels and prognosis in human breast cancer: association with treatment outcome.

Here, we set out to assess CA9 expression levels by real-time quantitative RT-PCR in breast cancer tissue samples obtained from 253 patients, and correlated those with relapse-free (RFS) survival. The median follow-up time was 75 months (range 2-168 months). CA9 expression was mainly found in high-grade, steroid receptor negative cancer tissues. CA9 levels were not significantly associated with RFS (P=0.926, hazard ratio (HR)=0.99, 95% CI=0.80-1.22) in the total cohort of 253 patients. In multivariate analysis with other clinicopathological factors, CA9 (P=0.018, HR=0.77, 95% CI=0.62-0.96), the interaction of adjuvant chemotherapy with CA9 (P=0.009, HR=1.31, 95% CI=1.07-1.61) and the interaction of adjuvant endocrine therapy with CA9 (P<0.001, HR=1.41, 95% CI=1.20-1.66) all contributed significantly to the final model. These results indicate that patients with low CA9 levels benefit more from adjuvant treatment than do patients with high levels. Thus, the determination of CA9 levels could aid in the selection of patients who will not benefit from adjuvant therapy, and whose prognosis will more likely improve with other treatment modalities.

Hypoxia has long been known to play an important role in the development of treatment resistance in cancer. Hypoxic cells are particularly radioresistant (Höckel ), but hypoxia has also been associated with resistance to chemotherapy (Luk ). Not only does tumour hypoxia directly attenuate therapy success, but it also leads to clonal selection of more aggressive cells leading to poor prognosis, independent of treatment modality (Höckel ; Rofstad, 2000). Molecular mechanisms underlying the association between hypoxia and treatment resistance are poorly understood. Identifying factors associated with treatment outcome in cancer patients provides the possibility to perform more effective therapies and offers targets for treatment resistance modification.

Carbonic anhydrase (CA)-9 is one of the best-known genes associated with tumour cell hypoxia, and is quickly and extensively upregulated under hypoxic conditions (Wykoff ; Lal ). CAs are a family of zinc metalloenzymes. The human gene product CA IX (MN or G250), originally identified in HeLa cells, catalyses the hydration of carbon dioxide to carbonic acid. CA IX is a transmembrane glycoprotein of 58/54 kDa, encoded by a 1.5 kb mRNA with exon 1 encoding a signal peptide and a proteoglycan-related region. Exons 2–8 code for a CA domain with a highly conserved active site. Exons 10 and 11 encode a transmembrane anchor and an intracytoplasmic tail, respectively (Opavsky ). Studies have reported on CA IX expression in several carcinomas such as renal cell (Liao ), colorectal (Saarnio ), nonsmall lung (Vermylen ; Giatromanolaki ), cervical (Olive ), bladder (Turner ) and nasopharyngeal carcinoma (Hui ), while being absent from most normal tissues. Its role in tumour growth and disease progression has been attributed to its effect on reducing pericellular pH in response to hypoxia, thereby facilitating the breakdown of extracellular matrix (Giatromanolaki ), but CA IX might also play a role in cell–cell communications.

In ductal carcinoma in situ of the breast, CA IX can be detected (Wykoff ). So far, only a few papers have addressed the expression of CA IX in invasive breast cancer (Chia ; Bartosova ). Here, we set out to assess CA9 expression levels in a large number of samples by real-time quantitative RT–PCR, and correlated those with relapse-free survival (RFS) in patients who were treated with surgery alone, or with additional radio-, chemo- and/or endocrine therapy. Thereby, we aimed at identifying a potential predictive value of CA9 for treatment success in breast cancer.

MATERIAL AND METHODS

Patients

Breast cancer tissue samples were obtained from 253 patients with unilateral, operable breast cancer who underwent resection of their primary tumour between February 1987 and December 1997. Selections were made based on availability of frozen tissue from eligible patients remaining in the tumour bank after routine oestrogen (ER) and progesterone receptor (PgR) ligand binding assay for five different hospitals of the Comprehensive Cancer Center East in the Netherlands. The median age was 60 years (range 31–88 years). Patients had no previous diagnosis of carcinoma (with the exception of basal cell carcinoma of the skin), no distant metastases at the time of diagnosis and no evidence of disease within 1 month after primary surgery. The latter patients are excluded because of the likely occurrence in this group of metastases at the time of primary surgery that escaped detection. Furthermore, patients receiving neo-adjuvant therapy or those with carcinoma in situ only were excluded. Patients underwent modified radical mastectomy (n=183) or breast-conserving therapy (n=70). Postoperative radiotherapy was given after mastectomy for T3-4 disease or in case of nodal involvement of ⩾3 nodes (n=114), and after BCT. Lymph node involvement was found in 131 patients. Subsequent systemic adjuvant therapy (85 endocrine therapy, 28 chemotherapy, 14 both) was given based on the consensus at the time of treatment. In the absence of involved axillary lymph nodes, patients usually did not receive adjuvant treatment. When involved axillary lymph nodes were detected, premenopausal patients received chemotherapy. In the case of an ER- and/or PgR-positive primary tumour, additional endocrine therapy was given to these patients. Postmenopausal patients with involved axillary lymph nodes and ER- and/or PgR-positive tumours received adjuvant endocrine therapy. If the primary tumour of these patients was hormone receptor negative, no adjuvant therapy was given, although in some cases endocrine therapy was opted for. The median follow-up time was 75 months (range 2–168 months). Patients were seen (history, physical examination, routine laboratory investigations) once every 3 months during the first 2 years, once every 6 months for the next 5 years and once a year afterwards. Once a year, X-ray mammography was made. During follow-up, 93 patients had a recurrence (20 locoregional, 71 distant metastases and two both) and 72 patients died of which 55 died due to breast cancer-related causes, two patients died by other malignancies, 15 patients died due to unknown causes. Contralateral breast cancer or second malignancies were not considered recurrent disease.

Tissue processing

After primary surgery, a representative part of tumour was selected by a pathologist, frozen in liquid nitrogen and processed for routine ER and PgR ligand binding assay. These assays were performed as recommended by the European Organisation for Research and Treatment of Cancer (EORTC). Aliquots of tissue were kept in liquid nitrogen until RNA isolation.

Immunohistochemistry

From the biopsy material, frozen sections of 5 μm were cut and mounted in poly-L-lysine-coated slides and stored at −80°C until staining. Prior to staining, sections were fixed for 10 min in acetone of 4°C and rehydrated in phosphate-buffered saline (PBS). Between all consecutive incubation procedures, tissue sections were rinsed in PBS three times for 3 min. After rehydration, the sections were incubated with 5% normal donkey serum (Jackson Immuno Research Laboratories Inc., West Grove, PA, USA) in Monoclonal Liquid Diluent Immunostain (MLD, Euro/DPC Inc., Llanberis, UK) for 30 min at 37°C. Subsequently, they were incubated with mouse anti-human G250 (kindly provided by Dr Oosterwijk, Department of Urology, University Medical Center Nijmegen, The Netherlands) 1 : 50 for 45 min at 37°C. Next, the slides were incubated with donkey anti-mouse-alkaline phosphatase (alkaline phosphatase-conjugated affine pure donkey anti-mouse IgG (H+L), Jackson Immuno Research Laboratories Inc.) 1 : 100 in MLD for 60 min at room temperature followed by incubation with Vector red substrate (Vector Red Alkaline Phosphatase Substrate Kit I, Vector Laboratories, Burlingame, CA, USA) for 30 min at room temperature and by rinsing in tap water. Both avidin and biotin were blocked for 15 min at room temperature (Avidine/biotine blocking Kit, Vector Laboratories). For staining of the vessels in the same tissue, the sections were incubated in mouse anti-human CD34 (Coulter Immunotech, Marseille, France) 1 : 20 in MLD overnight at 4°C. After incubation with donkey anti-mouse-biotin (Jackson ImmunoResearch Laboratories Inc.) 1 : 500 in MLD, 60 min at room temperature, slides were incubated with the ABC reagent (Vector ABC-Elite kit standard, Vector Laboratories) and rinsed in deionised water for at least 5 min. The colour was developed with DAB (liquid DAB substrate kit, Zymed Laboratories, Inc S. San Francisco, CA, USA) for 5 min at room temperature. After rinsing in tap water, the sections were counterstained with haematoxylin (Klinipath, Duiven, The Netherlands) for 30 s. Finally, after rinsing in tap water again the tissue sections were dehydrated and mounted with KP mounting medium (Klinipath).

RNA extraction

After pulverising by dismembration in liquid nitrogen, total RNA was isolated from approximately 20 mg tissue powder using the RNeasy mini kit (Qiagen, Hilden, Germany) with on-column DNase I treatment. The quality of the RNA was checked by examining ribosomal RNA bands after agarose gel electrophoresis, and by amplifying β-actin as a control (see below).

Reverse transcription

Reverse transcription was performed using the Reverse Transcription System (Promega Benelux BV, Leiden, The Netherlands) according to the manufacturer's protocol. After annealing of random hexamers for 10 min at 20°C, cDNA synthesis was performed for 30 min at 42°C followed by an enzyme inactivation step for 5 min at 95°C.

PCR

PCR reactions were carried out using Taqman Universal PCR master mix (PE Applied Biosystems, Nieuwerkerk a/d IJssel, the Netherlands) in a final volume of 25 μl. In all, 50 nM of the CA9 forward primer (5′-GAC GCC TGG CCG TGT TG-3′), and of the reverse primer (5′-CTG AGC CTT CCT CAG CGA TT-3′) and 200 nM of the Taqman probe (5′-TET-TTC TGG AGG AGG GCC CGG AAG A-3′) were used. Primers were from Biolegio BV (Malden, The Netherlands) and the Taqman probe from Perkin-Elmer (PE Applied Biosystems). The assay was designed intron-spanning using the Primer-Express software package version 1.5 (PE Applied Biosystems). β-Actin was amplified using the Pre-Developed Assay Reagents Taqman RT–PCR assay from Perkin-Elmer (PE Applied Biosystems). All amplifications, with denaturation at 95°C for 10 min, and 40 cycles of 15 s at 95°C (melting) and 60 s at 60°C (annealing and elongation), were performed on an ABI Prism 7700 Sequence detection system (PE Applied Biosystems). Quantification of unknown samples was performed using the colon cancer cell-line SW-480 as a calibrator.

Statistical analyses

Statistical analyses were carried out using SPSS 10.0.5 software (SPSS Benelux BV, Gorinchem, The Netherlands). Differences in levels of CA9 expression in samples from patients categorised by clinicopathological characteristics, used as grouping variables, were assessed with nonparametric Mann–Whitney U or Kruskall–Wallis testing where appropriate. RFS time (defined as the time from surgery until diagnosis of recurrent disease) was used as main follow-up end point. As adjuvant treatment modality was considered as variable in multivariate analyses, OS time (defined as the time between date of surgery and death by any cause) was not considered as end point, as in some patients OS will be influenced by additional interventions after disease recurrence. The Cox proportional hazards model was used to assess the prognostic value of CA9 expression in addition to other clinicopathological factors. CA9 levels were entered as a log-transformed continuous variable. An initial analysis is carried out including all classical clinicopathological factors, with stepwise removal of variables according to their likelihood ratio, to establish a base model. To test for treatment interactions, interaction variables were entered in the model in a second round, including CA9, the different treatment modalities (radiotherapy, endocrine therapy and chemotherapy) and their interaction terms (Altman and Lyman, 1998; Harbeck ; Foekens ). Two-sided P-values below 0.05 were considered to be statistically significant. Cases with >84 months of follow-up were censored at 84 months, because of the rapidly declining number of patients thereafter. This is because after a certain period of observation, patients are frequently redirected to their general practitioner for check-ups and mammography and cease to belong to the outpatients collective of our breast cancer clinic.

RESULTS

Frozen breast tumour specimens were stained for CA IX. The example shown in Figure 1 shows the typical relationship between membranous CA IX (anti-human G250, red) and surrounding tumour vasculature (anti-CD34 staining, brown). It could be seen that CA IX staining intensity increased at increasing distance from vessels, suggesting an association of CA IX with diffusion limited hypoxia.

Figure 1

Photomicrograph at X200 magnification illustrating the spatial relationship between CA IX (anti-human G250, red) and tumour vasculature (anti-CD34 staining, brown). Nuclei appear as magenta blue (haematoxylin).

RT–PCR

In six tumour samples, CA9 RT–PCR was negative after 40 rounds of amplification. In the other 247 samples, levels ranged from 3.4*10−7 to 4.6*10−2 in a log-normal distribution (see Figure 2). CA9 levels did not differ statistically significant with age, nodal status, menopausal status, tumour size, type of surgery, radiotherapy or adjuvant systemic treatment (Table 1 ). CA9 expression levels were found to differ, however, with histological grading (higher in grade III compared to grades I/II, P=0.009) and, most notably, with steroid hormone receptor status (higher in steroid receptor negative samples, P<0.001 for both ER and PgR, see Table 1).

Figure 2

Distribution of CA9 levels in human breast cancer: six tumour samples were found to be CA9 negative. The other 247 samples exhibited a basically log-normal distribution of CA9 levels.

Table 1

Categorical distributions of baseline characteristics of patients and CA9/β-actin levels

	Total group of patientsa
Variable	n	% of 253	10−4 CA9/β-actin median (interquartile range)	P
Age (years)
<50	57	22.5	1.3 (8.8)
⩾50	196	77.5	1.6 (6.8)	0.656c
Nodal statusb
Negative	103	40.7	1.0 (7.2)
1–3 nodes	78	30.8	1.6 (6.2)
⩾4 nodes	44	17.4	1.3 (7.9)	0.624d
Menopausal status
Premenopausal	64	25.3	1.3 (8.7)
Postmenopausal	189	74.7	1.6 (6.7)	0.878c
Tumour size
pT1	66	26.1	1.2 (7.0)
pT2	137	54.2	1.5 (5.8)
pT3+pT4	46	18.2	3.0 (1.6)	0.611d
Histological grade
I/II	84	33.2	1.1 (2.7)
III	86	34.0	4.2 (18)
Unknown	83	32.8	1.8 (6.6)	0.009d
ER (fmol mg−1 protein)
<10	88	34.8	7.2 (27)
⩾10	161	63.6	0.82 (2.7)	<0.001c
PgR (fmol mg−1 protein)
<10	103	40.7	6.2 (23)
⩾10	147	58.1	0.84 (3.1)	<0.001c
Surgery
Mastectomy	183	72.3	1.5 (6.9)
Breast-saving procedure	70	27.7	1.2 (7.1)	0.902c
Adjuvant radiotherapy
None	68	26.9	1.3 (6.6)
Any	184	72.7	1.5 (7.4)	0.822c
Adjuvant systemic therapy
None	126	49.8	1.7 (8.2)
Endocrine	85	33.6	1.5 (5.3)
Chemo	28	11.1	1.0 (5.6)
Both	14	5.5	2.8 (15)	0.735d

Owing to missing values data do not always add up to 253.

All patients with uncertain number of involved lymph nodes are node positive.

P for Mann–Whitney U test.

P for Kruskal–Wallis test.

Univariate survival analysis

In univariate Cox regression analysis, younger age (P=0.018), higher number of involved lymph nodes (P<0.001), greater tumour size (P=0.011) and higher grade (P=0.018) were associated with a poorer RFS (Table 2 ). In contrast to these factors, C49 levels were not significantly associated with RFS (P=0.926, hazard ratio (HR)=0.99, 95% CI=0.80–1.22) in the total cohort of 253 patients for RFS.

Table 2

Univariate Cox regression analysis of prognostic value of clinicopathological factors and CA9 expression for RFS

Variable	HR (95% CI)a	P
Age (years)
<50	1.0
⩾50	0.56 (0.35–0.91)	0.018
Nodal status
Negative	1.0
1–3 nodes	1.97 (1.1–3.5)
⩾4 nodes	4.23 (2.3–7.7)	<0.001
Menopausal status
Premenopausal
Postmenopausal		0.091
Tumour size
pT1	1.0
pT2	1.95 (1.1–3.6)
pT3+pT4	2.90 (1.5–5.8)	0.011
Histological grade
I/II	1.0
III	2.24 (1.3–3.9)
Unknown	1.59 (0.8–2.9)	0.018
ER (fmol mg−1 protein)
<10
⩾10		0.297
PgR (fmol mg−1 protein)
<10
⩾10		0.485
Surgery
Mastectomy
Breast-saving procedure		0.051
Adjuvant radiotherapy
None
Any		0.114
Adjuvant systemic therapy
None
Endocrine
Chemo
Both		0.680
CA9 expression continuous	0.99 (0.80–1.22)	0.926

Hazard ratio (95% CI).

Multivariate survival analysis

In multivariate analysis (Table 3 ), histological grade (P=0.019) and number of involved lymph nodes (P<0.001) remained as factors contributing significantly to RFS. Subsequently, CA9, treatment modalities and their interactions were entered. CA9 (P=0.018, HR=0.77, 95% CI=0.62–0.96), the interaction of chemotherapy with CA9 (P=0.009, HR=1.31, 95% CI=1.07–1.61) and the interaction of endocrine therapy with CA9 (P<0.001, HR=1.41, 95% CI=1.20–1.66) all contributed significantly to the final model. These results indicate that CA9 levels can be used to discriminate patients who are more likely to be resistant to endocrine and/or chemotherapy.

Table 3

Multivariatea Cox regression analysis

Variable	HR (95% CI)b	P
Base model
Age (years)		0.146
⩾50 vs <50	0.61 (0.31–1.19)
Tumour size		0.140
pT2 vs pT1	1.95 (0.98–3.86)
pT3+4 vs pT1	1.96 (0.90–4.28)
Histological grade		0.019
III vs I/II	2.20 (1.21–4.03)
No. of involved lymph nodes		<0.001
1–3 vs node negative	6.27 (2.89–13.6)
⩾4 vs node negative	13.1 (6.12–27.9)
ER statusc		0.852
Positive vs negative	1.08 (0.49–2.39)
PgR statusc		0.858
Positive vs negative	0.96 (0.58–1.58)
Additions to model
CA9		0.018
Log-transformed	0.77 (0.62–0.96)
Adjuvant radiotherapy		0.128
Yes vs no	0.60 (0.31–1.16)
Adjuvant chemotherapy		0.828
Yes vs no	0.76 (0.06–9.25)
Adjuvant endocrine therapy		0.889
Yes vs no	1.15 (0.17–7.96)
Interaction, radiotherapy × CA9		0.624
Yes and log-transformed vs no and log-transformed	0.89 (0.54–1.44)
Interaction, chemotherapy × CA9		0.009
Yes and log-transformed vs no and log-transformed	1.31 (1.07–1.61)
Interaction, endocrine therapy × CA9		<0.001
Yes and log-transformed vs no and log-transformed	1.41 (1.20–1.66)

The analysis was conducted in two blocks. Firstly, a model including all established clinicopathological factors was fitted. In a second block, the contributions ofCA9 (as a continuous, log-transformed variable), treatment and interactions were investigated.

The final multivariate model included 220 patients.

Hazard ratio (95% CI) of multivariate analysis.

Cut-off point used for ER and PgR, 10 fmol mg−1 protein.

DISCUSSION

Here, we are the first to show that CA9 expression as measured by real-time RT–PCR is related to poor outcome after adjuvant treatment in unilateral, invasive breast cancer. Furthermore, CA9 expression is mainly found in high-grade, steroid receptor negative cancer tissues.

Our approach, that is, the quantification of mRNA by real-time fluorescence RT–PCR, has several advantages over protein detection by immunohistochemistry (IHC). It has the potential of quantification over a wide range of levels and is extremely sensitive. It can be applied to small tissue samples, even after processing the tissues by powdering using a dismembrator for steroid hormone receptor assays as we show here. Finally, antibody-based methods can be less specific, and can be differentially hampered by post-translational modifications, making a proper comparison of data between institutions difficult. On the other hand, IHC methods can be more easily entered into routine clinical practice, and give additional information on the (sub)cellular and tissular expression of CA IX.

A total of 40–50% of the patients with node-positive breast cancer will develop distant metastases within 5 years after primary surgery despite the treatment with adjuvant systemic therapy (EBCTCG, 1996 1998). Thus, identifying patients who will benefit from the other, or more intense treatment protocols is clinically important. CA IX has been related to prognosis and prediction of radio- and/or chemotherapy success in several types of solid tumours (Giatromanolaki ; Koukourakis ; Loncaster ; Hui ; Turner ). Its association with prognosis has been reported earlier in breast cancer (Chia ), although this study included patients treated by adjuvant systemic therapy. The true prognostic value, however, of a given factor should be assessed in patients in the absence of adjuvant treatment (Hayes ; Henderson and Patek, 1998; Barratt ; Mori ). Predictive factors can be used to predict response or lack of response to a particular therapy (Mori ). Each therapy should be evaluated independently in patient cohorts defined by a predictive factor (Henderson and Patek, 1998). This can be best done in a prospective randomised clinical trial, which is not always feasible. On the other hand, large retrospective data sets containing substantial patient numbers with and without therapy are available for analysis. It is very difficult to draw conclusions on the predictive value of a marker because treatment decisions with regard to adjuvant systemic therapy were based primarily on consensus recommendations at that time, leading to selection bias etc. However, using multivariate analysis with interaction variables is one way to establish the predictive value of a factor from retrospective studies (Altman and Lyman, 1998; Harbeck ; Foekens ). In the current study, CA9 is shown to be an independent predictor of RFS after adjuvant treatment in invasive resectable breast cancer patients, also when corrected for other clinicopathological factors. Indeed, in multivariate Cox regression analysis, a highly significant interaction between endocrine and chemotherapy treatment and CA9 expression could be established.

Hypoxia is thought to be involved in the development of a radio- or chemotherapy-resistant phenotype of solid tumours. The evidence so far on an association of hypoxia, or factors such as CA9 that are induced by hypoxia, with resistance to endocrine therapy, however, is scarce. Hypoxia has been shown to lead to hormone insensitivity by ER degradation in breast cancer cell lines (Kurebayashi ; Stoner ). The level of VEGF, which is also induced under hypoxic conditions (Wykoff ; Lal ), predicts relapse in patients with breast cancer receiving adjuvant endocrine therapy more significantly than after polychemotherapy (Gasparini ; Linderholm ). Here, we show that hypoxia-associated CA9 expression is highest in high-grade, ER-negative breast tumours, which is in line with some (Chia ), but not all (Bartosova ), earlier studies. Interestingly, the latter study on CA9 in breast cancer (Bartosova ) reported a, albeit weak, correlation with Her2/neu, which is known to be associated with the acquirement of hormone insensitivity in breast tumours. Thus, either the reversed correlation between CA9 and ER status, or its positive correlation with Her2/neu, could explain the endocrine therapy resistance in tumours expressing high levels of CA9.

In conclusion, we describe here that CA9 is detectable in breast tumours and is associated with resistance to both adjuvant chemotherapy and endocrine therapy. Thus, CA9 could aid in the selection of patients who will not benefit from adjuvant therapy and whose prognosis will more likely improve with other treatment modalities.