Literature DB >> 12855438

Linking genotype to phenotype: the International Rice Information System (IRIS).

Richard M Bruskiewich1, Alexander B Cosico, William Eusebio, Arllet M Portugal, Luralyn M Ramos, Ma Teresa Reyes, May Ann B Sallan, Victor Jun M Ulat, Xusheng Wang, Kenneth L McNally, Ruaraidh Sackville Hamilton, Christopher Graham McLaren.   

Abstract

The International Rice Information System (IRIS, http://www.iris.irri.org) is the rice implementation of the International Crop Information System (ICIS, http://www.icis.cgiar.org), a database system for the management and integration of global information on genetic resources and germplasm improvement for any crop. Building upon the germplasm genealogy and field data components of ICIS, IRIS is being extended to handle diverse rice genomics data including: genetic mapping, genome annotation, genotype, mutant, transcripteome, proteome and metabolomic data. Users can access information in the database through stand-alone programs and WWW interfaces offering specialist views to researchers with different interests.

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Year:  2003        PMID: 12855438     DOI: 10.1093/bioinformatics/btg1006

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

1.  GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

Authors:  Jennifer M Lee; Guy F Davenport; David Marshall; T H Noel Ellis; Michael J Ambrose; Jo Dicks; Theo J L van Hintum; Andrew J Flavell
Journal:  Plant Physiol       Date:  2005-10       Impact factor: 8.340

2.  Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.

Authors:  Feng-Chi Chen; Sheng-Shun Wang; Shu-Miaw Chaw; Yao-Ting Huang; Trees-Juen Chuang
Journal:  Plant Physiol       Date:  2007-01-12       Impact factor: 8.340

3.  The International Rice Information System. A platform for meta-analysis of rice crop data.

Authors:  Christopher Graham McLaren; Richard M Bruskiewich; Arllet M Portugal; Alexander B Cosico
Journal:  Plant Physiol       Date:  2005-10       Impact factor: 8.340

4.  Identification of candidate genes for drought stress tolerance in rice by the integration of a genetic (QTL) map with the rice genome physical map.

Authors:  Xu-Sheng Wang; Jun Zhu; Locedie Mansueto; Richard Bruskiewich
Journal:  J Zhejiang Univ Sci B       Date:  2005-05       Impact factor: 3.066

5.  Computable visually observed phenotype ontological framework for plants.

Authors:  Jaturon Harnsomburana; Jason M Green; Adrian S Barb; Mary Schaeffer; Leszek Vincent; Chi-Ren Shyu
Journal:  BMC Bioinformatics       Date:  2011-06-24       Impact factor: 3.169

6.  The generation challenge programme platform: semantic standards and workbench for crop science.

Authors:  Richard Bruskiewich; Martin Senger; Guy Davenport; Manuel Ruiz; Mathieu Rouard; Tom Hazekamp; Masaru Takeya; Koji Doi; Kouji Satoh; Marcos Costa; Reinhard Simon; Jayashree Balaji; Akinnola Akintunde; Ramil Mauleon; Samart Wanchana; Trushar Shah; Mylah Anacleto; Arllet Portugal; Victor Jun Ulat; Supat Thongjuea; Kyle Braak; Sebastian Ritter; Alexis Dereeper; Milko Skofic; Edwin Rojas; Natalia Martins; Georgios Pappas; Ryan Alamban; Roque Almodiel; Lord Hendrix Barboza; Jeffrey Detras; Kevin Manansala; Michael Jonathan Mendoza; Jeffrey Morales; Barry Peralta; Rowena Valerio; Yi Zhang; Sergio Gregorio; Joseph Hermocilla; Michael Echavez; Jan Michael Yap; Andrew Farmer; Gary Schiltz; Jennifer Lee; Terry Casstevens; Pankaj Jaiswal; Ayton Meintjes; Mark Wilkinson; Benjamin Good; James Wagner; Jane Morris; David Marshall; Anthony Collins; Shoshi Kikuchi; Thomas Metz; Graham McLaren; Theo van Hintum
Journal:  Int J Plant Genomics       Date:  2008

7.  A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders.

Authors:  Nick Fradgley; Keith A Gardner; James Cockram; James Elderfield; John M Hickey; Phil Howell; Robert Jackson; Ian J Mackay
Journal:  PLoS Biol       Date:  2019-02-28       Impact factor: 8.029

8.  Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library.

Authors:  Pierre Larmande; Céline Gay; Mathias Lorieux; Christophe Périn; Matthieu Bouniol; Gaëtan Droc; Christophe Sallaud; Pascual Perez; Isabelle Barnola; Corinne Biderre-Petit; Jérôme Martin; Jean Benoît Morel; Alexander A T Johnson; Fabienne Bourgis; Alain Ghesquière; Manuel Ruiz; Brigitte Courtois; Emmanuel Guiderdoni
Journal:  Nucleic Acids Res       Date:  2007-10-18       Impact factor: 16.971

  8 in total

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