Literature DB >> 12855373

400000 nematode ESTs on the Net.

John Parkinson1, Makedonka Mitreva, Neil Hall, Mark Blaxter, James P McCarter.   

Abstract

The parasitic nematode expressed sequence tag (EST) project, a collaboration between University of Edinburgh and the Wellcome Trust Sanger Institute in the UK and the Genome Sequencing Center, St Louis, MO, USA, is currently generating sequence information from >30 different species of nematode. Over 400000 nematode ESTs are now available and at least another 130000 are planned. Here, an update is provided on the status of the project and describes the database tools being developed to disseminate these data.

Mesh：

Year:  2003        PMID： 12855373     DOI： 10.1016/s1471-4922(03)00132-6

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN： 1471-4922


  14 in total

1.  Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes.

Authors:  Todd Wylie; John C Martin; Michael Dante; Makedonka Dautova Mitreva; Sandra W Clifton; Asif Chinwalla; Robert H Waterston; Richard K Wilson; James P McCarter
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Molecular and biochemical characterization of an endo-beta-1,3-glucanase from the pinewood nematode Bursaphelenchus xylophilus acquired by horizontal gene transfer from bacteria.

Authors:  Taisei Kikuchi; Hajime Shibuya; John T Jones
Journal:  Biochem J       Date:  2005-07-01       Impact factor: 3.857

Review 3.  Human hookworm infection in the 21st century.

Authors:  Simon Brooker; Jeffrey Bethony; Peter J Hotez
Journal:  Adv Parasitol       Date:  2004       Impact factor: 3.870

Review 4.  The biology and genomics of Strongyloides.

Authors:  M E Viney
Journal:  Med Microbiol Immunol       Date:  2006-03-15       Impact factor: 3.402

5.  A comparison of experience-dependent locomotory behaviors and biogenic amine neurons in nematode relatives of Caenorhabditis elegans.

Authors:  Laura Rivard; Jagan Srinivasan; Allison Stone; Stacy Ochoa; Paul W Sternberg; Curtis M Loer
Journal:  BMC Neurosci       Date:  2010-02-19       Impact factor: 3.288

6.  Genes encoding putative biogenic amine receptors in the parasitic nematode Brugia malayi.

Authors:  Katherine A Smith; Richard W Komuniecki; Elodie Ghedin; David Spiro; John Gray
Journal:  Invert Neurosci       Date:  2007-11-20

7.  Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans.

Authors:  Makedonka Mitreva; James P McCarter; John Martin; Mike Dante; Todd Wylie; Brandi Chiapelli; Deana Pape; Sandra W Clifton; Thomas B Nutman; Robert H Waterston
Journal:  Genome Res       Date:  2004-02       Impact factor: 9.043

8.  RNAi effector diversity in nematodes.

Authors:  Johnathan J Dalzell; Paul McVeigh; Neil D Warnock; Makedonka Mitreva; David McK Bird; Pierre Abad; Colin C Fleming; Tim A Day; Angela Mousley; Nikki J Marks; Aaron G Maule
Journal:  PLoS Negl Trop Dis       Date:  2011-06-07

9.  Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species.

Authors:  Makedonka Mitreva; Michael C Wendl; John Martin; Todd Wylie; Yong Yin; Allan Larson; John Parkinson; Robert H Waterston; James P McCarter
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

10.  Regulation of Caenorhabditis elegans body size and male tail development by the novel gene lon-8.

Authors:  Gwen Soete; Marco C Betist; Hendrik C Korswagen
Journal:  BMC Dev Biol       Date:  2007-03-20       Impact factor: 1.978
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