Literature DB >> 12846396

Making decisions for structural genomics.

Ana Rodrigues1, Roderick E Hubbard.   

Abstract

A large number of structural genomics programmes have been established worldwide with the common aim of large-scale, high-throughput protein structure determination. Due to the considerable challenges posed by the experimental methods of structural determination (primarily X-ray crystallography and nuclear magnetic resonance spectroscopy) it is important to select and prioritise candidate molecules that will maximise the information gained from each new structure. This paper describes the scientific principles that underlie target selection and the various bioinformatics tools that may be employed in such selection procedures. Then follows a discussion of the availability of resources incorporating these methods and a description of the design and application of a purpose-built target selection resource for structural genomics.

Mesh:

Year:  2003        PMID: 12846396     DOI: 10.1093/bib/4.2.150

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  6 in total

1.  The challenge of protein structure determination--lessons from structural genomics.

Authors:  Lukasz Slabinski; Lukasz Jaroszewski; Ana P C Rodrigues; Leszek Rychlewski; Ian A Wilson; Scott A Lesley; Adam Godzik
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

2.  Sequence-based prediction of protein crystallization, purification and production propensity.

Authors:  Marcin J Mizianty; Lukasz Kurgan
Journal:  Bioinformatics       Date:  2011-07-01       Impact factor: 6.937

3.  sgTarget: a target selection resource for structural genomics.

Authors:  Ana P C Rodrigues; Barry J Grant; Roderick E Hubbard
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

4.  Covering complete proteomes with X-ray structures: a current snapshot.

Authors:  Marcin J Mizianty; Xiao Fan; Jing Yan; Eric Chalmers; Christopher Woloschuk; Andrzej Joachimiak; Lukasz Kurgan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-10-23

5.  fDETECT webserver: fast predictor of propensity for protein production, purification, and crystallization.

Authors:  Fanchi Meng; Chen Wang; Lukasz Kurgan
Journal:  BMC Bioinformatics       Date:  2018-01-03       Impact factor: 3.169

6.  TarO: a target optimisation system for structural biology.

Authors:  Ian M Overton; C A Johannes van Niekerk; Lester G Carter; Alice Dawson; David M A Martin; Scott Cameron; Stephen A McMahon; Malcolm F White; William N Hunter; James H Naismith; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2008-04-02       Impact factor: 16.971

  6 in total

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