Literature DB >> 12844489

Glutamate counteracts the denaturing effect of urea through its effect on the denatured state.

Amit Kumar Mandal1, Soma Samaddar, Rajat Banerjee, Simanti Lahiri, Anusree Bhattacharyya, Siddhartha Roy.   

Abstract

The urea induced equilibrium denaturation behavior of glutaminyl-tRNA synthetase from Escherichia coli (GlnRS) in 0.25 m potassium l-glutamate, a naturally occurring osmolyte in E. coli, has been studied. Both the native to molten globule and molten globule to unfolded state transitions are shifted significantly toward higher urea concentrations in the presence of l-glutamate, suggesting that l-glutamate has the ability to counteract the denaturing effect of urea. d-Glutamate has a similar effect on the equilibrium denaturation of glutaminyl-tRNA synthetase, indicating that the effect of l-glutamate may not be due to substrate-like binding to the native state. The activation energy of unfolding is not significantly affected in the presence of 0.25 m potassium l-glutamate, indicating that the native state is not preferentially stabilized by the osmolyte. Dramatic increase of coefficient of urea concentration dependence (m) values of both the transitions in the presence of glutamate suggests destabilization and increased solvent exposure of the denatured states. Four other osmolytes, sorbitol, trimethylamine oxide, inositol, and triethylene glycol, show either a modest effect or no effect on native to molten globule transition of glutaminyl-tRNA synthetase. However, glycine betaine significantly shifts the transition to higher urea concentrations. The effect of these osmolytes on other proteins is mixed. For example, glycine betaine counteracts urea denaturation of tubulin but promotes denaturation of S228N lambda-repressor and carbonic anhydrase. Osmolyte counteraction of urea denaturation depends on osmolyte-protein pair.

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Year:  2003        PMID: 12844489     DOI: 10.1074/jbc.M211207200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

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Authors:  Rajat Banerjee; Amit Kumar Mandal; Rajesh Saha; Soumi Guha; Soma Samaddar; Anusree Bhattacharyya; Siddhartha Roy
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

2.  The cancer-associated, gain-of-function TP53 variant P152Lp53 activates multiple signaling pathways implicated in tumorigenesis.

Authors:  Siddharth Singh; Manoj Kumar; Sanjeev Kumar; Shrinka Sen; Pawan Upadhyay; Sayan Bhattacharjee; Naveen M; Vivek Singh Tomar; Siddhartha Roy; Amit Dutt; Tapas K Kundu
Journal:  J Biol Chem       Date:  2019-07-31       Impact factor: 5.157

Review 3.  Living with urea stress.

Authors:  Laishram R Singh; Tanveer Ali Dar; Faizan Ahmad
Journal:  J Biosci       Date:  2009-06       Impact factor: 1.826

4.  Unraveling the concentration-dependent metabolic response of Pseudomonas sp. HF-1 to nicotine stress by ¹H NMR-based metabolomics.

Authors:  Yangfang Ye; Xin Wang; Limin Zhang; Zhenmei Lu; Xiaojun Yan
Journal:  Ecotoxicology       Date:  2012-03-22       Impact factor: 2.823

5.  Sorbitol counteracts temperature- and chemical-induced denaturation of a recombinant α-amylase from alkaliphilic Bacillus sp. TS-23.

Authors:  Meng-Chun Chi; Tai-Jung Wu; Hsing-Ling Chen; Huei-Fen Lo; Long-Liu Lin
Journal:  J Ind Microbiol Biotechnol       Date:  2012-08-12       Impact factor: 3.346

6.  Salinity-dependent switching of osmolyte strategies in a moderately halophilic bacterium: glutamate induces proline biosynthesis in Halobacillus halophilus.

Authors:  Stephan H Saum; Volker Müller
Journal:  J Bacteriol       Date:  2007-07-27       Impact factor: 3.490

7.  Fusion with anticodon binding domain of GluRS is not sufficient to alter the substrate specificity of a chimeric Glu-Q-RS.

Authors:  Sutapa Ray; Mickael Blaise; Bappaditya Roy; Saptaparni Ghosh; Daniel Kern; Rajat Banerjee
Journal:  Protein J       Date:  2014-02       Impact factor: 2.371

8.  Organic compatible solutes of halotolerant and halophilic microorganisms.

Authors:  Mary F Roberts
Journal:  Saline Systems       Date:  2005-08-04

9.  Regulation of osmoadaptation in the moderate halophile Halobacillus halophilus: chloride, glutamate and switching osmolyte strategies.

Authors:  Stephan H Saum; Volker Müller
Journal:  Saline Systems       Date:  2008-04-28

10.  Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability.

Authors:  Hari Bhaskaran; Takaaki Taniguchi; Takeo Suzuki; Tsutomu Suzuki; John J Perona
Journal:  Biochemistry       Date:  2014-02-26       Impact factor: 3.162

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