Literature DB >> 12842490

GenomeComp: a visualization tool for microbial genome comparison.

Jian Yang1, Jinhua Wang, Zhi-Jian Yao, Qi Jin, Yan Shen, Runsheng Chen.   

Abstract

We have developed a software tool, GenomeComp, for summarizing, parsing and visualizing the genome sequences comparison results derived from voluminous BLAST textual output. With GenomeComp, the variation between genomes can be easily highlighted, such as repeat regions, insertions, deletions and rearrangements of genomic segments. This software provides a new visualizing tool for microbe comparative genomics.

Mesh：

Year:  2003        PMID： 12842490     DOI： 10.1016/s0167-7012(03)00094-0

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  25 in total

1.  Complete genome sequence of the extremophilic Bacillus cereus strain Q1 with industrial applications.

Authors:  Zhaohui Xiong; Yan Jiang; Danhua Qi; Huaibao Lu; Fan Yang; Jian Yang; Lihong Chen; Lilian Sun; Xingye Xu; Ying Xue; Yafang Zhu; Qi Jin
Journal:  J Bacteriol       Date:  2008-12-05       Impact factor: 3.490

2.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

3.  Multispacer typing to study the genotypic distribution of Bartonella henselae populations.

Authors:  Wenjun Li; Bruno B Chomel; Soichi Maruyama; Lynn Guptil; Anna Sander; Didier Raoult; Pierre-Edouard Fournier
Journal:  J Clin Microbiol       Date:  2006-07       Impact factor: 5.948

4.  Genomic differences between Actinobacillus pleuropneumoniae serotypes 5b and 3 and their distribution and transcription among 15 serotypes.

Authors:  Feng Yang; Fang Xie; Yuwen Jiang; Suqing Li; Yanping Xing; Yu Wang; Xin Feng; Wenyu Han; Liancheng Lei
Journal:  Curr Microbiol       Date:  2011-07-20       Impact factor: 2.188

5.  Comparison of probe hybridization array typing to multilocus sequence typing for pathogenic Escherichia coli.

Authors:  Sara E McNamara; Usha Srinivasan; Lixin Zhang; Thomas S Whittam; Carl F Marrs; Betsy Foxman
Journal:  J Clin Microbiol       Date:  2009-01-14       Impact factor: 5.948

6.  CompaGB: An open framework for genome browsers comparison.

Authors:  Thomas Lacroix; Valentin Loux; Annie Gendrault; Jean-François Gibrat; Hélène Chiapello
Journal:  BMC Res Notes       Date:  2011-05-04

7.  Tracing lifestyle adaptation in prokaryotic genomes.

Authors:  Eric Altermann
Journal:  Front Microbiol       Date:  2012-02-21       Impact factor: 5.640

8.  Specialized adaptation of a lactic acid bacterium to the milk environment: the comparative genomics of Streptococcus thermophilus LMD-9.

Authors:  Yong Jun Goh; Caitlin Goin; Sarah O'Flaherty; Eric Altermann; Robert Hutkins
Journal:  Microb Cell Fact       Date:  2011-08-30       Impact factor: 5.328

9.  Meander: visually exploring the structural variome using space-filling curves.

Authors:  Georgios A Pavlopoulos; Parveen Kumar; Alejandro Sifrim; Ryo Sakai; Meng Lay Lin; Thierry Voet; Yves Moreau; Jan Aerts
Journal:  Nucleic Acids Res       Date:  2013-04-19       Impact factor: 16.971

10.  Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects.

Authors:  Jennifer Commins; Christina Toft; Mario A Fares
Journal:  Biol Proced Online       Date:  2009-03-11       Impact factor: 3.244
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