Literature DB >> 12838345

The study of structured populations--new hope for a difficult and divided science.

Jody Hey1, Carlos A Machado.   

Abstract

Natural populations, including those of humans, have complex geographies and histories. Studying how they evolve is difficult, but it is possible with population-based DNA sequence data. However, the study of structured populations is divided by two distinct schools of thought and analysis. The phylogeographic approach is fundamentally graphical and begins with a gene-tree estimate. By contrast, the more traditional approach of using summary statistics is fundamentally mathematical. Both approaches have limitations, but there is promise in newer probabilistic methods that offer the flexibility and data exploitation of the phylogeographic approach in an explicitly model-based mathematical framework.

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Year:  2003        PMID: 12838345     DOI: 10.1038/nrg1112

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  57 in total

1.  Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.

Authors:  Jody Hey; Rasmus Nielsen
Journal:  Genetics       Date:  2004-06       Impact factor: 4.562

2.  Unified modeling of gene duplication, loss, and coalescence using a locus tree.

Authors:  Matthew D Rasmussen; Manolis Kellis
Journal:  Genome Res       Date:  2012-01-23       Impact factor: 9.043

3.  Population divergence with or without admixture: selecting models using an ABC approach.

Authors:  V C Sousa; M A Beaumont; P Fernandes; M M Coelho; L Chikhi
Journal:  Heredity (Edinb)       Date:  2011-12-07       Impact factor: 3.821

4.  The structured ancestral selection graph and the many-demes limit.

Authors:  Paul F Slade; John Wakeley
Journal:  Genetics       Date:  2004-11-01       Impact factor: 4.562

5.  Likelihoods from summary statistics: recent divergence between species.

Authors:  Scotland C Leman; Yuguo Chen; Jason E Stajich; Mohamed A F Noor; Marcy K Uyenoyama
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

6.  Evolution of coadaptation in a subdivided population.

Authors:  K Ryo Takahasi
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

7.  Spectrum of genetic diversity and networks of clonal organisms.

Authors:  Alejandro F Rozenfeld; Sophie Arnaud-Haond; Emilio Hernández-García; Víctor M Eguíluz; Manuel A Matías; Ester Serrão; Carlos M Duarte
Journal:  J R Soc Interface       Date:  2007-12-22       Impact factor: 4.118

8.  Identifying loci under selection against gene flow in isolation-with-migration models.

Authors:  Vitor C Sousa; Miguel Carneiro; Nuno Ferrand; Jody Hey
Journal:  Genetics       Date:  2013-03-02       Impact factor: 4.562

9.  The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses.

Authors:  Jody Hey
Journal:  Mol Biol Evol       Date:  2009-12-02       Impact factor: 16.240

10.  Population genetics of speciation in two closely related wild tomatoes (Solanum section Lycopersicon).

Authors:  Thomas Städler; Uraiwan Arunyawat; Wolfgang Stephan
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

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