Literature DB >> 12838343

Classification schemes for protein structure and function.

Christos A Ouzounis1, Richard M R Coulson, Anton J Enright, Victor Kunin, José B Pereira-Leal.   

Abstract

We examine the structural and functional classifications of the protein universe, providing an overview of the existing classification schemes, their features and inter-relationships. We argue that a unified scheme should be based on a natural classification approach and that more comparative analyses of the present schemes are required both to understand their limitations and to help delimit the number of known protein folds and their corresponding functional roles in cells.

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Year:  2003        PMID: 12838343     DOI: 10.1038/nrg1113

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  32 in total

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2.  A glimpse at the organization of the protein universe.

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Journal:  Proteins       Date:  2015-02-28

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5.  Formal TCA cycle description based on elementary actions.

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Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

6.  Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study.

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Journal:  BIBE 2004       Date:  2004-05

7.  Mining tertiary structural motifs for assessment of designability.

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Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

8.  Exploring protein structural dissimilarity to facilitate structure classification.

Authors:  Pooja Jain; Jonathan D Hirst
Journal:  BMC Struct Biol       Date:  2009-09-19

9.  Sequence-based feature prediction and annotation of proteins.

Authors:  Agnieszka S Juncker; Lars J Jensen; Andrea Pierleoni; Andreas Bernsel; Michael L Tress; Peer Bork; Gunnar von Heijne; Alfonso Valencia; Christos A Ouzounis; Rita Casadio; Søren Brunak
Journal:  Genome Biol       Date:  2009-02-02       Impact factor: 13.583

10.  A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

Authors:  Torgeir R Hvidsten; Astrid Laegreid; Andriy Kryshtafovych; Gunnar Andersson; Krzysztof Fidelis; Jan Komorowski
Journal:  PLoS One       Date:  2009-07-15       Impact factor: 3.240

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