Literature DB >> 12836086

Good-Enough RFLP Matcher (GERM) program.

Ian A Dickie1, Peter G Avis, David J McLaughlin, Peter B Reich.   

Abstract

A spreadsheet-based program (Good-Enough RFLP Matcher or GERM) is presented that matches unknown restriction fragment length polymorphism (RFLP) patterns of ectomycorrhizal fungi to a database of known ectomycorrhizal fungi. The program uses three simple methods to determine whether a sample matches a known: (1) Forward Matching: whether every band in the unknown is present in a known sample within a given error range; (2) Backward Matching: whether every band in the known sample is present in the unknown within a given error range; (3) Sum of Bands: whether the sum of all bands in the known and unknown are similar within a given error range. The program is available through the web page of this journal.

Mesh:

Year:  2003        PMID: 12836086     DOI: 10.1007/s00572-003-0225-x

Source DB:  PubMed          Journal:  Mycorrhiza        ISSN: 0940-6360            Impact factor:   3.387


  2 in total

Review 1.  The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

Authors:  T R Horton; T D Bruns
Journal:  Mol Ecol       Date:  2001-08       Impact factor: 6.185

2.  ITS-RFLP matching for identification of fungi.

Authors:  M Gardes; T D Bruns
Journal:  Methods Mol Biol       Date:  1996
  2 in total
  10 in total

1.  Similar taxonomic richness but different communities of ectomycorrhizas in native forests and non-native plantation forests.

Authors:  Richard O'Hanlon; Thomas J Harrington
Journal:  Mycorrhiza       Date:  2011-09-27       Impact factor: 3.387

2.  FragMatch--a program for the analysis of DNA fragment data.

Authors:  T A Saari; S K Saari; C D Campbell; I J Alexander; I C Anderson
Journal:  Mycorrhiza       Date:  2007-01-17       Impact factor: 3.387

3.  Long-term increase in nitrogen supply alters above- and below-ground ectomycorrhizal communities and increases the dominance of Russula spp. in a temperate oak savanna.

Authors:  Peter G Avis; David J McLaughlin; Bryn C Dentinger; Peter B Reich
Journal:  New Phytol       Date:  2003-10       Impact factor: 10.151

4.  Shared ectomycorrhizal fungi between a herbaceous perennial (Helianthemum bicknellii) and oak (Quercus) seedlings.

Authors:  Ian A Dickie; Rebecca C Guza; Sarah E Krazewski; Peter B Reich
Journal:  New Phytol       Date:  2004-11       Impact factor: 10.151

5.  Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soils in Yellowstone National Park (USA).

Authors:  Susann Appoloni; Ylva Lekberg; Michael T Tercek; Catherine A Zabinski; Dirk Redecker
Journal:  Microb Ecol       Date:  2008-05-01       Impact factor: 4.552

6.  Relationships between stand composition and ectomycorrhizal community structure in boreal mixed-wood forests.

Authors:  T DeBellis; G Kernaghan; R Bradley; P Widden
Journal:  Microb Ecol       Date:  2006-05-13       Impact factor: 4.552

7.  The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment.

Authors:  Zuzana Sýkorová; Kurt Ineichen; Andres Wiemken; Dirk Redecker
Journal:  Mycorrhiza       Date:  2007-09-19       Impact factor: 3.387

8.  Species-specific measurements of ectomycorrhizal turnover under N-fertilization: combining isotopic and genetic approaches.

Authors:  Kathleen K Treseder; C A Masiello; J L Lansing; M F Allen
Journal:  Oecologia       Date:  2003-12-10       Impact factor: 3.225

9.  Ectomycorrhizal species associated with Pinus radiata in New Zealand including novel associations determined by molecular analysis.

Authors:  Katrin Walbert; Tod D Ramsfield; Hayley J Ridgway; E Eirian Jones
Journal:  Mycorrhiza       Date:  2009-09-16       Impact factor: 3.387

10.  Cooccurring Gentiana verna and Gentiana acaulis and their neighboring plants in two Swiss upper montane meadows harbor distinct arbuscular mycorrhizal fungal communities.

Authors:  Zuzana Sykorová; Andres Wiemken; Dirk Redecker
Journal:  Appl Environ Microbiol       Date:  2007-07-13       Impact factor: 4.792

  10 in total

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