Literature DB >> 12835274

The DynDom database of protein domain motions.

Richard A Lee1, Moe Razaz, Steven Hayward.   

Abstract

UNLABELLED: A relational database has been developed based on the results from the application of the DynDom program to a number of proteins for which multiple X-ray conformers are available. The database is populated via a web-based tool that allows visitors to the website to run the DynDom program server-side by selecting pairs of X-ray conformers by Protein Data Bank code and chain identifier. AVAILABILITY: The website can be found at: http://www.sys.uea.ac.uk/dyndom.

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Year:  2003        PMID： 12835274     DOI： 10.1093/bioinformatics/btg137

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  46 in total

1.  Crystal and solution studies of the "Plus-C" odorant-binding protein 48 from Anopheles gambiae: control of binding specificity through three-dimensional domain swapping.

Authors:  Katerina E Tsitsanou; Christina E Drakou; Trias Thireou; Anna Vitlin Gruber; Georgia Kythreoti; Abdussalam Azem; Dimitrios Fessas; Elias Eliopoulos; Kostas Iatrou; Spyros E Zographos
Journal:  J Biol Chem       Date:  2013-10-04       Impact factor: 5.157

2.  Collective dynamics of periplasmic glutamine binding protein upon domain closure.

Authors:  Hannes H Loeffler; Akio Kitao
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

Review 3.  ChSeq: A database of chameleon sequences.

Authors:  Wenlin Li; Lisa N Kinch; P Andrew Karplus; Nick V Grishin
Journal:  Protein Sci       Date:  2015-06-16       Impact factor: 6.725

4.  Structural Basis for Substrate Preference of SMYD3, a SET Domain-containing Protein Lysine Methyltransferase.

Authors:  Weiqi Fu; Nan Liu; Qi Qiao; Mingzhu Wang; Jinrong Min; Bing Zhu; Rui-Ming Xu; Na Yang
Journal:  J Biol Chem       Date:  2016-02-29       Impact factor: 5.157

5.  Enzyme closure and nucleotide binding structurally lock guanylate kinase.

Authors:  Olivier Delalande; Sophie Sacquin-Mora; Marc Baaden
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

6.  The structural basis of integrin-linked kinase-PINCH interactions.

Authors:  Brian P Chiswell; Rong Zhang; James W Murphy; Titus J Boggon; David A Calderwood
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-12       Impact factor: 11.205

7.  First crystal structure of L-lysine 6-dehydrogenase as an NAD-dependent amine dehydrogenase.

Authors:  Kazunari Yoneda; Junya Fukuda; Haruhiko Sakuraba; Toshihisa Ohshima
Journal:  J Biol Chem       Date:  2010-01-07       Impact factor: 5.157

8.  Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme.

Authors:  Omar Davulcu; Peter F Flynn; Michael S Chapman; Jack J Skalicky
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

9.  Structural basis of the methylation specificity of R.DpnI.

Authors:  Karolina Mierzejewska; Wojciech Siwek; Honorata Czapinska; Magdalena Kaus-Drobek; Monika Radlinska; Krzysztof Skowronek; Janusz M Bujnicki; Michal Dadlez; Matthias Bochtler
Journal:  Nucleic Acids Res       Date:  2014-06-25       Impact factor: 16.971

10.  Database of ligand-induced domain movements in enzymes.

Authors:  Guoying Qi; Steven Hayward
Journal:  BMC Struct Biol       Date:  2009-03-06
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