Literature DB >> 12835261

Putting the Predictive Toxicology Challenge into perspective: reflections on the results.

Romualdo Benigni1, Alessandro Giuliani.   

Abstract

MOTIVATION: Chemical carcinogenicity is of primary interest, because it drives much of the current regulatory actions regarding new and existing chemicals, and its experimental determination involves time-consuming and expensive animal testing. Both academia and private companies are actively trying to develop SAR and QSAR models. This paper reviews the new Predictive Toxicology Challenge (PTC) results, by putting them into the context of previous attempts.
RESULTS: A marked dependency of the prediction ability of the different algorithms on the training sets was observed, pointing to a still insufficient coverage of the chemical carcinogens 'universe'. A theoretical treatment of the possible developments of the Artificial Intelligence approaches is sketched.

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Year:  2003        PMID: 12835261     DOI: 10.1093/bioinformatics/btg099

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  9 in total

1.  Analogue-based approaches in anti-cancer compound modelling: the relevance of QSAR models.

Authors:  Mohammed Hussaini Bohari; Hemant Kumar Srivastava; Garikapati Narahari Sastry
Journal:  Org Med Chem Lett       Date:  2011-07-18

2.  A radial-distribution-function approach for predicting rodent carcinogenicity.

Authors:  Aliuska Helguera Morales; Miguel Angel Cabrera Pérez; Maykel Pérez González
Journal:  J Mol Model       Date:  2006-01-19       Impact factor: 1.810

3.  Lazy structure-activity relationships (lazar) for the prediction of rodent carcinogenicity and Salmonella mutagenicity.

Authors:  Christoph Helma
Journal:  Mol Divers       Date:  2006-05-24       Impact factor: 2.943

4.  Quantitative and qualitative models for carcinogenicity prediction for non-congeneric chemicals using CP ANN method for regulatory uses.

Authors:  Natalja Fjodorova; Marjan Vračko; Marjan Tušar; Aneta Jezierska; Marjana Novič; Ralph Kühne; Gerrit Schüürmann
Journal:  Mol Divers       Date:  2009-08-15       Impact factor: 2.943

5.  Hepatotoxic potential of therapeutic oligonucleotides can be predicted from their sequence and modification pattern.

Authors:  Peter H Hagedorn; Victor Yakimov; Søren Ottosen; Susanne Kammler; Niels F Nielsen; Anja M Høg; Maj Hedtjärn; Michael Meldgaard; Marianne R Møller; Henrik Orum; Troels Koch; Morten Lindow
Journal:  Nucleic Acid Ther       Date:  2013-08-16       Impact factor: 5.486

6.  Predictive QSAR modelling of algal toxicity of ionic liquids and its interspecies correlation with Daphnia toxicity.

Authors:  Kunal Roy; Rudra Narayan Das; Paul L A Popelier
Journal:  Environ Sci Pollut Res Int       Date:  2014-11-21       Impact factor: 4.223

7.  New public QSAR model for carcinogenicity.

Authors:  Natalja Fjodorova; Marjan Vracko; Marjana Novic; Alessandra Roncaglioni; Emilio Benfenati
Journal:  Chem Cent J       Date:  2010-07-29       Impact factor: 4.215

8.  Quantitative Structure-Antioxidant Activity Models of Isoflavonoids: A Theoretical Study.

Authors:  Gloria Castellano; Francisco Torrens
Journal:  Int J Mol Sci       Date:  2015-06-08       Impact factor: 5.923

9.  A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model.

Authors:  Richard Judson; Fathi Elloumi; R Woodrow Setzer; Zhen Li; Imran Shah
Journal:  BMC Bioinformatics       Date:  2008-05-19       Impact factor: 3.169

  9 in total

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