Literature DB >> 12831890

Computational methods of analysis of protein-protein interactions.

Lukasz Salwinski1, David Eisenberg.   

Abstract

Computational methods play an important role at all stages of the process of determining protein-protein interactions. They are used to predict potential interactions, to validate the results of high-throughput interaction screens and to analyze the protein networks inferred from interaction databases.

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Substances：

Year:  2003        PMID： 12831890     DOI： 10.1016/s0959-440x(03)00070-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  33 in total

1.  The Database of Interacting Proteins: 2004 update.

Authors:  Lukasz Salwinski; Christopher S Miller; Adam J Smith; Frank K Pettit; James U Bowie; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

3.  Protein interface conservation across structure space.

Authors:  Qiangfeng Cliff Zhang; Donald Petrey; Raquel Norel; Barry H Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

4.  Conservation and relative importance of residues across protein-protein interfaces.

Authors:  Mainak Guharoy; Pinak Chakrabarti
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-12       Impact factor: 11.205

5.  Evaluation of different biological data and computational classification methods for use in protein interaction prediction.

Authors:  Yanjun Qi; Ziv Bar-Joseph; Judith Klein-Seetharaman
Journal:  Proteins       Date:  2006-05-15

6.  Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding.

Authors:  Young C Kim; Gerhard Hummer
Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

7.  Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression.

Authors:  Stefanie De Bodt; Sebastian Proost; Klaas Vandepoele; Pierre Rouzé; Yves Van de Peer
Journal:  BMC Genomics       Date:  2009-06-29       Impact factor: 3.969

8.  Development of a novel bioinformatics tool for in silico validation of protein interactions.

Authors:  Nicola Barbarini; Luca Simonelli; Alberto Azzalin; Sergio Comincini; Riccardo Bellazzi
Journal:  J Biomed Biotechnol       Date:  2010-06-07

9.  SpaK/SpaR two-component system characterized by a structure-driven domain-fusion method and in vitro phosphorylation studies.

Authors:  Anu Chakicherla; Carol L Ecale Zhou; Martha Ligon Dang; Virginia Rodriguez; J Norman Hansen; Adam Zemla
Journal:  PLoS Comput Biol       Date:  2009-06-05       Impact factor: 4.475

10.  Protein-protein docking using region-based 3D Zernike descriptors.

Authors:  Vishwesh Venkatraman; Yifeng D Yang; Lee Sael; Daisuke Kihara
Journal:  BMC Bioinformatics       Date:  2009-12-09       Impact factor: 3.169
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