Literature DB >> 12827276

Do natural DNA triple-helical structures occur and function in vivo?

R Zain1, J-S Sun.   

Abstract

Formation of natural intramolecular triple-helical structures of DNA is still an intriguing research topic in view of the possible involvement of these structures in biological processes. The biochemical and biophysical properties of DNA triplex structures have been extensively studied, and experimental data show that H-DNA is likely to form in vivo and may regulate the expression of various genes. However, direct and unambiguous evidence of the possible biological roles of these structures is yet elusive. This review focuses on the basic facts that are in favor of, or against, the hypothesis of the presence and function of natural DNA triple-helical structures in vivo, and outlines the different methods and probes that have been used to support these facts.

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Year:  2003        PMID: 12827276     DOI: 10.1007/s00018-003-3046-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  14 in total

Review 1.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

2.  How Does Mg2+ Modulate the RNA Folding Mechanism: A Case Study of the G:C W:W Trans Basepair.

Authors:  Antarip Halder; Rohit Roy; Dhananjay Bhattacharyya; Abhijit Mitra
Journal:  Biophys J       Date:  2017-05-12       Impact factor: 4.033

3.  A distinct triplex DNA unwinding activity of ChlR1 helicase.

Authors:  Manhong Guo; Kristian Hundseth; Hao Ding; Venkatasubramanian Vidhyasagar; Akira Inoue; Chi-Hung Nguyen; Rula Zain; Jeremy S Lee; Yuliang Wu
Journal:  J Biol Chem       Date:  2015-01-05       Impact factor: 5.157

4.  Potential sites of triple-helical nucleic acid formation in chromosomes of Rhynchosciara (Diptera: Sciaridae) and Drosophila melanogaster.

Authors:  Eduardo Gorab; José Mariano Amabis; Ann Jacob Stocker; Laura Drummond; Bernard David Stollar
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

Review 5.  DNA triple helices: biological consequences and therapeutic potential.

Authors:  Aklank Jain; Guliang Wang; Karen M Vasquez
Journal:  Biochimie       Date:  2008-02-21       Impact factor: 4.079

6.  Binding of novel 9-O-N-aryl/arylalkyl amino carbonyl methyl berberine analogs to poly(U)-poly(A)·poly(U) triplex and comparison to the duplex poly(A)-poly(U).

Authors:  Anirban Basu; Parasuraman Jaisankar; Gopinatha Suresh Kumar
Journal:  Mol Biol Rep       Date:  2014-05-30       Impact factor: 2.316

7.  Non-B DNA Secondary Structures and Their Resolution by RecQ Helicases.

Authors:  Sudha Sharma
Journal:  J Nucleic Acids       Date:  2011-10-02

8.  New insights into DNA triplexes: residual twist and radial difference as measures of base triplet non-isomorphism and their implication to sequence-dependent non-uniform DNA triplex.

Authors:  R Thenmalarchelvi; N Yathindra
Journal:  Nucleic Acids Res       Date:  2005       Impact factor: 16.971

9.  TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.

Authors:  Piroon Jenjaroenpun; Vladimir A Kuznetsov
Journal:  BMC Genomics       Date:  2009-12-03       Impact factor: 3.969

Review 10.  The self-assembled behavior of DNA bases on the interface.

Authors:  Lei Liu; Dan Xia; Lasse H Klausen; Mingdong Dong
Journal:  Int J Mol Sci       Date:  2014-01-27       Impact factor: 5.923

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