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Literature DB >> 12824432

Biological SOAP servers and web services provided by the public sequence data bank.

Abstract

A number of biological data resources (i.e. databases and data analytical tools) are searchable and usable on-line thanks to the internet and the World Wide Web (WWW) servers. The output from the web server is easy for us to browse. However, it is laborious and sometimes impossible for us to write a computer program that finds a useful data resource, sends a proper query and processes the output. It is a serious obstacle to the integration of distributed heterogeneous data resources. To solve the issue, we have implemented a SOAP (Simple Object Access Protocol) server and web services that provide a program-friendly interface. The web services are accessible at http://www.xml.nig.ac.jp/.

Mesh：

Year: 2003 PMID： 12824432 PMCID： PMC168965 DOI： 10.1093/nar/gkg558

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

4 in total

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Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

2. Creating a bioinformatics nation.

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Journal: Nature Date: 2002-05-09 Impact factor: 49.962

3. DNA Data Bank of Japan (DDBJ) in XML.

Authors: S Miyazaki; H Sugawara; T Gojobori; Y Tateno
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

4. BioMOBY: an open source biological web services proposal.

Authors: Mark D Wilkinson; Matthew Links
Journal: Brief Bioinform Date: 2002-12 Impact factor: 11.622

4 in total

14 in total

1. DDBJ in the stream of various biological data.

Authors: S Miyazaki; H Sugawara; K Ikeo; T Gojobori; Y Tateno
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

2. TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.

Authors: Toshiaki Katayama; Mitsuteru Nakao; Toshihisa Takagi
Journal: Nucleic Acids Res Date: 2010-05-14 Impact factor: 16.971

3. XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services.

Authors: Johannes Wagener; Ola Spjuth; Egon L Willighagen; Jarl E S Wikberg
Journal: BMC Bioinformatics Date: 2009-09-04 Impact factor: 3.169

4. G-InforBIO: integrated system for microbial genomics.

Authors: Naoto Tanaka; Takashi Abe; Satoru Miyazaki; Hideaki Sugawara
Journal: BMC Bioinformatics Date: 2006-08-04 Impact factor: 3.169

5. XML schemas for common bioinformatic data types and their application in workflow systems.

Authors: Philipp N Seibel; Jan Krüger; Sven Hartmeier; Knut Schwarzer; Kai Löwenthal; Henning Mersch; Thomas Dandekar; Robert Giegerich
Journal: BMC Bioinformatics Date: 2006-11-06 Impact factor: 3.169

6. The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

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Journal: Nucleic Acids Res Date: 2014-12-03 Impact factor: 16.971

7. Web API for biology with a workflow navigation system.

Authors: Yeondae Kwon; Yasumasa Shigemoto; Yoshikazu Kuwana; Hideaki Sugawara
Journal: Nucleic Acids Res Date: 2009-05-05 Impact factor: 16.971

8. DDBJ with new system and face.

Authors: H Sugawara; O Ogasawara; K Okubo; T Gojobori; Y Tateno
Journal: Nucleic Acids Res Date: 2007-10-25 Impact factor: 16.971

9. Integrating sequence and structural biology with DAS.

Authors: Andreas Prlić; Thomas A Down; Eugene Kulesha; Robert D Finn; Andreas Kähäri; Tim J P Hubbard
Journal: BMC Bioinformatics Date: 2007-09-12 Impact factor: 3.169

10. DDBJ progress report: a new submission system for leading to a correct annotation.

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Journal: Nucleic Acids Res Date: 2013-11-04 Impact factor: 16.971