Literature DB >> 12824431

NORSp: Predictions of long regions without regular secondary structure.

Jinfeng Liu1, Burkhard Rost.   

Abstract

Many structurally flexible regions play important roles in biological processes. It has been shown that extended loopy regions are very abundant in the protein universe and that they have been conserved through evolution. Here, we present NORSp, a publicly available predictor for disordered regions in protein. Specifically, NORSp predicts long regions with NO Regular Secondary structure. Upon user submission of a protein sequence, NORSp will analyse the protein for its secondary structure, presence of transmembrane helices and coiled-coil. It will then return email to the user about the presence and position of disordered regions. NORSp can be accessed from http://cubic.bioc.columbia.edu/services/NORSp/.

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Year:  2003        PMID: 12824431      PMCID: PMC168922          DOI: 10.1093/nar/gkg515

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

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Authors:  B Rost
Journal:  J Struct Biol       Date:  2001 May-Jun       Impact factor: 2.867

2.  The protein trinity--linking function and disorder.

Authors:  A K Dunker; Z Obradovic
Journal:  Nat Biotechnol       Date:  2001-09       Impact factor: 54.908

3.  A conserved helix-unfolding motif in the naturally unfolded proteins.

Authors:  C R Zetina
Journal:  Proteins       Date:  2001-09-01

Review 4.  Roles of partly unfolded conformations in macromolecular self-assembly.

Authors:  K Namba
Journal:  Genes Cells       Date:  2001-01       Impact factor: 1.891

Review 5.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

6.  Sequence complexity of disordered protein.

Authors:  P Romero; Z Obradovic; X Li; E C Garner; C J Brown; A K Dunker
Journal:  Proteins       Date:  2001-01-01

7.  Target space for structural genomics revisited.

Authors:  Jinfeng Liu; Burkhard Rost
Journal:  Bioinformatics       Date:  2002-07       Impact factor: 6.937

8.  Loopy proteins appear conserved in evolution.

Authors:  Jinfeng Liu; Hepan Tan; Burkhard Rost
Journal:  J Mol Biol       Date:  2002-09-06       Impact factor: 5.469

9.  Protein disorder and the evolution of molecular recognition: theory, predictions and observations.

Authors:  A K Dunker; E Garner; S Guilliot; P Romero; K Albrecht; J Hart; Z Obradovic; C Kissinger; J E Villafranca
Journal:  Pac Symp Biocomput       Date:  1998

Review 10.  Intrinsically disordered protein.

Authors:  A K Dunker; J D Lawson; C J Brown; R M Williams; P Romero; J S Oh; C J Oldfield; A M Campen; C M Ratliff; K W Hipps; J Ausio; M S Nissen; R Reeves; C Kang; C R Kissinger; R W Bailey; M D Griswold; W Chiu; E C Garner; Z Obradovic
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

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  40 in total

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Authors:  Burkhard Rost; Jinfeng Liu
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  The PredictProtein server.

Authors:  Burkhard Rost; Guy Yachdav; Jinfeng Liu
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 3.  Understanding protein non-folding.

Authors:  Vladimir N Uversky; A Keith Dunker
Journal:  Biochim Biophys Acta       Date:  2010-02-01

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5.  Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.

Authors:  Jessica Walton Chen; Pedro Romero; Vladimir N Uversky; A Keith Dunker
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6.  Removal of phosphorylation sites of gamma subunit of phosphodiesterase 6 alters rod light response.

Authors:  S H Tsang; M L Woodruff; Kerstin M Janisch; M C Cilluffo; D B Farber; G L Fain
Journal:  J Physiol       Date:  2006-11-30       Impact factor: 5.182

Review 7.  Titin/connectin-related proteins in C. elegans: a review and new findings.

Authors:  Tracey M Ferrara; Denise B Flaherty; Guy M Benian
Journal:  J Muscle Res Cell Motil       Date:  2005       Impact factor: 2.698

8.  Assembly of turnip yellow mosaic virus replication complexes: interaction between the proteinase and polymerase domains of the replication proteins.

Authors:  Anna Jakubiec; Julien Notaise; Vincent Tournier; François Héricourt; Maryse A Block; Gabrièle Drugeon; Linda van Aelst; Isabelle Jupin
Journal:  J Virol       Date:  2004-08       Impact factor: 5.103

Review 9.  The importance of being flexible: the case of basic region leucine zipper transcriptional regulators.

Authors:  Maria Miller
Journal:  Curr Protein Pept Sci       Date:  2009-06       Impact factor: 3.272

10.  Identification and analysis of polyserine linker domains in prokaryotic proteins with emphasis on the marine bacterium Microbulbifer degradans.

Authors:  Michael B Howard; Nathan A Ekborg; Larry E Taylor; Steven W Hutcheson; Ronald M Weiner
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

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