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Literature DB >> 12824421

WU-Blast2 server at the European Bioinformatics Institute.

Rodrigo Lopez¹, Ville Silventoinen, Stephen Robinson, Asif Kibria, Warren Gish.

Abstract

Since 1995, the WU-BLAST programs (http://blast.wustl.edu) have provided a fast, flexible and reliable method for similarity searching of biological sequence databases. The software is in use at many locales and web sites. The European Bioinformatics Institute's WU-Blast2 (http://www.ebi.ac.uk/blast2/) server has been providing free access to these search services since 1997 and today supports many features that both enhance the usability and expand on the scope of the software.

Entities: Gene

Mesh：

Year: 2003 PMID： 12824421 PMCID： PMC168979 DOI： 10.1093/nar/gkg573

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

20 in total

1. DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.

Authors: J D Thompson; F Plewniak; J Thierry; O Poch
Journal: Nucleic Acids Res Date: 2000-08-01 Impact factor: 16.971

2. GPCRDB information system for G protein-coupled receptors.

Authors: Florence Horn; Emmanuel Bettler; Laerte Oliveira; Fabien Campagne; Fred E Cohen; Gerrit Vriend
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

3. PRINTS and its automatic supplement, prePRINTS.

Authors: T K Attwood; P Bradley; D R Flower; A Gaulton; N Maudling; A L Mitchell; G Moulton; A Nordle; K Paine; P Taylor; A Uddin; C Zygouri
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

4. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors: Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

5. IMGT, the international ImMunoGeneTics database.

Authors: Marie-Paule Lefranc
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

6. The EMBL Nucleotide Sequence Database: major new developments.

Authors: Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Francesco Nardone; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

7. The European Bioinformatics Institute's data resources.

Authors: Catherine Brooksbank; Evelyn Camon; Midori A Harris; Michele Magrane; Maria Jesus Martin; Nicola Mulder; Claire O'Donovan; Helen Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; Kim Henrick; Rodrigo Lopez; Guenter Stoesser; Peter Stoehr; Graham Cameron
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

8. MView: a web-compatible database search or multiple alignment viewer.

Authors: N P Brown; C Leroy; C Sander
Journal: Bioinformatics Date: 1998 Impact factor: 6.937

9. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.

Authors: S Karlin; S F Altschul
Journal: Proc Natl Acad Sci U S A Date: 1990-03 Impact factor: 11.205

10. IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex.

Authors: James Robinson; Matthew J Waller; Peter Parham; Natasja de Groot; Ronald Bontrop; Lorna J Kennedy; Peter Stoehr; Steven G E Marsh
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

68 in total

1. The EMBL Nucleotide Sequence Database.

Authors: Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; Nicola Harte; Carola Kanz; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Peter Stoehr; Guenter Stoesser; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

2. Public web-based services from the European Bioinformatics Institute.

Authors: Nicola Harte; Ville Silventoinen; Emmanuel Quevillon; Stephen Robinson; Kimmo Kallio; Xavier Fustero; Pravin Patel; Petteri Jokinen; Rodrigo Lopez
Journal: Nucleic Acids Res Date: 2004-07-01 Impact factor: 16.971

3. Screening of antimicrobials from Caribbean sea animals and isolation of bactericidal proteins from the littoral mollusk Cenchritis muricatus.

Authors: Carlos López-Abarrategui; Annia Alba; Loiane A Lima; Simone Maria-Neto; Ilka M Vasconcelos; Jose T A Oliveira; Simoni C Dias; Anselmo J Otero-Gonzalez; Octavio L Franco
Journal: Curr Microbiol Date: 2012-02-26 Impact factor: 2.188

4. Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression.

Authors: Anna Git; Heidi Dvinge; Mali Salmon-Divon; Michelle Osborne; Claudia Kutter; James Hadfield; Paul Bertone; Carlos Caldas
Journal: RNA Date: 2010-04-01 Impact factor: 4.942

5. Crystal structure of a novel non-Pfam protein PF2046 solved using low resolution B-factor sharpening and multi-crystal averaging methods.

Authors: Jing Su; Yang Li; Neil Shaw; Weihong Zhou; Min Zhang; Hao Xu; Bi-Cheng Wang; Zhi-Jie Liu
Journal: Protein Cell Date: 2010-06-04 Impact factor: 14.870

6. An atypical proprotein convertase in Giardia lamblia differentiation.

Authors: B J Davids; M A Gilbert; Q Liu; D S Reiner; A J Smith; T Lauwaet; C Lee; A G McArthur; F D Gillin
Journal: Mol Biochem Parasitol Date: 2010-11-12 Impact factor: 1.759

7. Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

Authors: Alina Castell; Patrik Johansson; Torsten Unge; T Alwyn Jones; Kristina Bäckbro
Journal: Protein Sci Date: 2005-07 Impact factor: 6.725