Literature DB >> 12812504

Theoretical analysis of the porphyrin-porphyrin exciton interaction in circular dichroism spectra of dimeric tetraarylporphyrins.

Gennaro Pescitelli1, Sven Gabriel, Yuekui Wang, Jörg Fleischhauer, Robert W Woody, Nina Berova.   

Abstract

Chiral bis-porphyrins are currently the subject of intense interest as chiral receptors and as probes in the determination of structure and stereochemistry. To provide an improved framework for interpreting the circular dichroism (CD) spectra of bis-porphyrins, we have calculated the CD spectra of chiral bis-porphyrins from three classes: I, where porphyrins can adopt a relatively wide range of orientations relative to each other; II, porphyrins have a fixed relative orientation; III, porphyrins undergo pi-stacking. The calculations primarily utilized the classical polarizability theory of DeVoe, but were supplemented by the quantum mechanical matrix method. Class I was represented by three isomers of the diester of 5alpha-cholestane-3,17-diol with 5-(4'-carboxyphenyl)-10,15,20-triphenylporphin (2-alphabeta, 2-betaalpha, 2-betabeta). Careful analysis of the torsional degrees of freedom led to two to four minimum-energy conformers for each isomer, in each of which the phenyl-porphyrin bonds had torsional angles near 90 degrees. Libration about these bonds is relatively unrestricted over a range of +/-45 degrees. CD spectra in the Soret region were calculated as Boltzmann-weighted averages over the low-energy conformers for each isomer. Three models were used: the effective transition moment model, in which only one of the degenerate Soret components is considered, along the 5-15 direction; the circular oscillator model, in which both Soret components are given equal weight; and the hybrid model, in which the 10-20 oscillator is given half the weight of the 5-15 oscillator, to mimic the effect of extensive librational averaging about the 5-15 direction. All three models predict Soret exciton couplets with signs in agreement with experiment. Quantitatively, the best results are given by the hybrid and circular oscillator models. These results validate the widely used effective transition moment model for qualitative assignments of bis-porphyrin chirality and thus permit application of the exciton chirality model. However, for quantitative studies, the circular oscillator or hybrid models should be used. The simplified effective transition moment and hybrid models are justified by the librational averaging in the class I bis-porphyrins and should only be used with such systems. Two class II bis-porphyrins were also studied by DeVoe method calculations in the circular oscillator model, which yielded good agreement with experiment. Class III bis-porphyrins were represented by 2-alphaalpha, for which the calculations gave qualitative agreement. However, limitations in the conformational analysis with the close contacts and dynamic effects in these pi-stacked systems preclude quantitative results.

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Year:  2003        PMID: 12812504     DOI: 10.1021/ja030047v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore.

Authors:  H Christopher Fry; Andreas Lehmann; Jeffery G Saven; William F DeGrado; Michael J Therien
Journal:  J Am Chem Soc       Date:  2010-03-24       Impact factor: 15.419

2.  Three challenges toward the assignment of absolute configuration of gymnocin-B.

Authors:  Katsunori Tanaka; Yasuhiro Itagaki; Masayuki Satake; Hideo Naoki; Takeshi Yasumoto; Koji Nakanishi; Nina Berova
Journal:  J Am Chem Soc       Date:  2005-07-06       Impact factor: 15.419

3.  Syntheses and energy transfer in multiporphyrinic arrays self-assembled with hydrogen-bonding recognition groups and comparison with covalent steroidal models.

Authors:  Teodor Silviu Balaban; Nina Berova; Charles Michael Drain; Robert Hauschild; Xuefei Huang; Heinz Kalt; Sergei Lebedkin; Jean-Marie Lehn; Fotis Nifaitis; Gennaro Pescitelli; Valentyn I Prokhorenko; Gernot Riedel; Gabriela Smeureanu; Joachim Zeller
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

4.  Using alpha-helical coiled-coils to design nanostructured metalloporphyrin arrays.

Authors:  Karen A McAllister; Hongling Zou; Frank V Cochran; Gretchen M Bender; Alessandro Senes; H Christopher Fry; Vikas Nanda; Patricia A Keenan; James D Lear; Jeffery G Saven; Michael J Therien; J Kent Blasie; William F DeGrado
Journal:  J Am Chem Soc       Date:  2008-08-19       Impact factor: 15.419

Review 5.  ECD exciton chirality method today: a modern tool for determining absolute configurations.

Authors:  Gennaro Pescitelli
Journal:  Chirality       Date:  2021-11-17       Impact factor: 2.183

6.  Repeat protein scaffolds: ordering photo- and electroactive molecules in solution and solid state.

Authors:  Sara H Mejías; Javier López-Andarias; Tsuneaki Sakurai; Satoru Yoneda; Kevin P Erazo; Shu Seki; Carmen Atienza; Nazario Martín; Aitziber L Cortajarena
Journal:  Chem Sci       Date:  2016-05-24       Impact factor: 9.825

7.  Porphyrin Molecules Decorated on Metal-Organic Frameworks for Multi-Functional Biomedical Applications.

Authors:  Navid Rabiee; Mohammad Rabiee; Soheil Sojdeh; Yousef Fatahi; Rassoul Dinarvand; Moein Safarkhani; Sepideh Ahmadi; Hossein Daneshgar; Fatemeh Radmanesh; Saeid Maghsoudi; Mojtaba Bagherzadeh; Rajender S Varma; Ebrahim Mostafavi
Journal:  Biomolecules       Date:  2021-11-17

8.  Density functional study of tetraphenylporphyrin long-range exciton coupling.

Authors:  Barry Moore; Jochen Autschbach
Journal:  ChemistryOpen       Date:  2012-08-21       Impact factor: 2.911

9.  Increased duplex stabilization in porphyrin-LNA zipper arrays with structure dependent exciton coupling.

Authors:  Daniel G Singleton; Rohanah Hussain; Giuliano Siligardi; Pawan Kumar; Patrick J Hrdlicka; Nina Berova; Eugen Stulz
Journal:  Org Biomol Chem       Date:  2015-09-29       Impact factor: 3.876

10.  Synthesis and Properties of Bis-Porphyrin Molecular Tweezers: Effects of Spacer Flexibility on Binding and Supramolecular Chirogenesis.

Authors:  Magnus Blom; Sara Norrehed; Claes-Henrik Andersson; Hao Huang; Mark E Light; Jonas Bergquist; Helena Grennberg; Adolf Gogoll
Journal:  Molecules       Date:  2015-12-23       Impact factor: 4.411

  10 in total

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