Literature DB >> 12812496

Optical spectroscopic investigations of model beta-sheet hairpins in aqueous solution.

Jovencio Hilario1, Jan Kubelka, Timothy A Keiderling.   

Abstract

In this contribution we report optical spectroscopic data on a series of designed beta hairpins previously shown by NMR to contain a substantial population of beta-sheet structure. These models contain a designed hydrophobic cluster and a (D)Pro-Gly sequence to promote formation of a turn geometry. FTIR, electronic and vibrational CD (ECD and VCD) spectra for these small peptides are comparable to expected bandshapes for peptides of high beta-sheet content. The (D)Pro-Gly sequence provides a better turn motif than Asn-Gly as measured by its beta-sheet spectral characteristics. IR and VCD spectra are in qualitative agreement with theoretical simulations based on transfer of parameters from ab initio quantum mechanical force field and intensity computations for the turn and strands. These calculations provide assignments for some distinguishing modes in both IR and VCD spectra. Increased sheet structure can be induced in these hairpins by use of mixed solvent conditions. Thermal denaturation studies reveal that these hairpins undergo very broad unfolding transitions. Guanidine hydrochloride unfolding transitions for the selected hairpin models are similarly broad. However, the "end-states" of temperature and chaotropic denaturation are spectroscopically differentiable.

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Year:  2003        PMID: 12812496     DOI: 10.1021/ja030039e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Structure of A beta(25-35) peptide in different environments.

Authors:  Ganesh Shanmugam; Prasad L Polavarapu
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  Detection of chiral sum frequency generation vibrational spectra of proteins and peptides at interfaces in situ.

Authors:  Jie Wang; Xiaoyun Chen; Matthew L Clarke; Zhan Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

3.  Role of hydrophobic interactions and salt-bridges in beta-hairpin folding.

Authors:  Aswin Sai Narain Seshasayee; Krishnan Raghunathan; Karthikeyan Sivaraman; Gautam Pennathur
Journal:  J Mol Model       Date:  2005-10-18       Impact factor: 1.810

4.  An infrared spectroscopic study of the conformational transition of elastin-like polypeptides.

Authors:  Vesna Serrano; Wenge Liu; Stefan Franzen
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

Review 5.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

6.  Dual time-resolved temperature-jump fluorescence and infrared spectroscopy for the study of fast protein dynamics.

Authors:  Caitlin M Davis; Michael J Reddish; R Brian Dyer
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2017-02-02       Impact factor: 4.098

7.  Raising the speed limit for β-hairpin formation.

Authors:  Caitlin M Davis; Shifeng Xiao; Daniel P Raleigh; R Brian Dyer
Journal:  J Am Chem Soc       Date:  2012-08-21       Impact factor: 15.419

8.  Dynamics of an ultrafast folding subdomain in the context of a larger protein fold.

Authors:  Caitlin M Davis; R Brian Dyer
Journal:  J Am Chem Soc       Date:  2013-12-13       Impact factor: 15.419

9.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

10.  VCD spectroscopic properties of the beta-hairpin forming miniprotein CLN025 in various solvents.

Authors:  Marcus P D Hatfield; Richard F Murphy; Sándor Lovas
Journal:  Biopolymers       Date:  2010-05       Impact factor: 2.505

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