Literature DB >> 12812081

Phylogenetic relationships among citrus and its relatives as revealed by SSR markers.

Xiao-Ming Pang1, Chun-Gen Hu, Xiu-Xin Deng.   

Abstract

Phylogenetic relationships among 29 accessions belonging to Citrus, Poncirus, Fortunella, Microcitrus, Eremocitrus, Atlantia and Severinia were investigated using SSR markers. Seven SSR primers generated 114 polymorphic alleles, with an average of 16.3 alleles per primer. Cluster analysis via neighbour-joining method showed that Microcitrus was close to Citrus; Poncirus was distant from Citrus, which suggested that Poncirus could not be derived from Citrus. High frequency of the homozygous SSR locus supported the species status of Fumin trifoliate orange. Separation of neither Papeda and Citrus nor Archicitrus and Metacitrus was well resolved. The present work confirmed citron, pummelo and mandarin as basic species of cultivated citrus since they could be placed into three distinct clusters.

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Year:  2003        PMID： 12812081

Source DB:  PubMed          Journal:  Yi Chuan Xue Bao        ISSN： 0379-4172


  6 in total

1.  Genetic variation assessment of acid lime accessions collected from south of Iran using SSR and ISSR molecular markers.

Authors:  Ata Allah Sharafi; Asad Asadi Abkenar; Ali Sharafi; Mohammad Masaeli
Journal:  Physiol Mol Biol Plants       Date:  2016-01-20

2.  Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus.

Authors:  Manosh Kumar Biswas; Lijun Chai; Christoph Mayer; Qiang Xu; Wenwu Guo; Xiuxin Deng
Journal:  Mol Biol Rep       Date:  2011-12-15       Impact factor: 2.316

3.  De novo assembly and characterization of the fruit transcriptome of Chinese jujube (Ziziphus jujuba Mill.) Using 454 pyrosequencing and the development of novel tri-nucleotide SSR markers.

Authors:  Yingyue Li; Chaoqun Xu; Xinggu Lin; Binbin Cui; Rongling Wu; Xiaoming Pang
Journal:  PLoS One       Date:  2014-09-03       Impact factor: 3.240

4.  Chemotaxonomic study of Citrus, Poncirus and Fortunella genotypes based on peel oil volatile compounds--deciphering the genetic origin of Mangshanyegan (Citrus nobilis Lauriro).

Authors:  Cuihua Liu; Dong Jiang; Yunjiang Cheng; Xiuxin Deng; Feng Chen; Liu Fang; Zhaocheng Ma; Juan Xu
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

5.  Isolation and characterization of microsatellite markers and analysis of genetic diversity in Chinese jujube (Ziziphus jujuba Mill.).

Authors:  Siqi Wang; Ying Liu; Liying Ma; Huabo Liu; Yan Tang; Liping Wu; Zhe Wang; Yingyue Li; Rongling Wu; Xiaoming Pang
Journal:  PLoS One       Date:  2014-06-16       Impact factor: 3.240

6.  A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus.

Authors:  Ze Peng; Jessen V Bredeson; Guohong A Wu; Shengqiang Shu; Nidhi Rawat; Dongliang Du; Saroj Parajuli; Qibin Yu; Qian You; Daniel S Rokhsar; Frederick G Gmitter; Zhanao Deng
Journal:  Plant J       Date:  2020-10-18       Impact factor: 6.417
  6 in total

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