Literature DB >> 12808718

Specific quantification of human genomes from low copy number DNA samples in forensic and ancient DNA studies.

Antonio Alonso1, Pablo Martin, Cristina Albarrán, Pilar García, Dragan Primorac, Oscar García, Lourdes Fernández de Simón, Julia García-Hirschfeld, Manuel Sancho, Jose Fernández-Piqueras.   

Abstract

We reviewed the current methodologies used for human DNA quantitation in forensic and ancient DNA studies, including sensitive hybridization methods based on the detection of nuclear alpha-satellite repetitive DNA regions or more recently developed fluorogenic real-time polymerase chain reaction (PCR) designs for the detection of both nuclear and mitochondrial DNA regions. Special emphasis has been put on the applicability of recently described different real-time PCR designs targeting different fragments of the HV1 mtDNA control region, and a segment of the X-Y homologous amelogenin gene. The importance of these quantitative assays is to ensure the consistency of low copy number DNA typing (STR profiling and mtDNA sequencing).

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Year:  2003        PMID: 12808718

Source DB:  PubMed          Journal:  Croat Med J        ISSN: 0353-9504            Impact factor:   1.351


  10 in total

1.  Real-Time PCR Quantification of Chloroplast DNA Supports DNA Barcoding of Plant Species.

Authors:  Hitomi S Kikkawa; Kouichiro Tsuge; Ritsuko Sugita
Journal:  Mol Biotechnol       Date:  2016-03       Impact factor: 2.695

2.  Multiplex mutagenically separated polymerase chain reaction assay for rapid detection of human mitochondrial DNA variations in coding area.

Authors:  Jin Wu; Peng Ran; Beilei Zhang; Yingbi Li; Jing Yan; Miao Liao; Yiping Hou; Lin Zhang
Journal:  Croat Med J       Date:  2008-02       Impact factor: 1.351

3.  DNA analysis of early mediaeval individuals from the Zvonimirovo burial site in Northern Croatia: investigation of kinship relationships by using multiplex system amplification for short tandem repeat loci.

Authors:  Jadranka Boljuncić
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

4.  Mitochondrial DNA 4977 bp deletion is a common phenomenon in hair and increases with age.

Authors:  Yijie Zheng; Xiaofeng Luo; Junfeng Zhu; Xuan Zhang; Yinting Zhu; Huihua Cheng; Zhiqiu Xia; Na Su; Nengpei Zhang; Junyi Zhou
Journal:  Bosn J Basic Med Sci       Date:  2012-08       Impact factor: 3.363

Review 5.  Forensic DNA databases in Western Balkan region: retrospectives, perspectives, and initiatives.

Authors:  Damir Marjanović; Rijad Konjhodzić; Sara Sanela Butorac; Katja Drobnic; Sinisa Merkas; Gordan Lauc; Damir Primorac; Simun Andjelinović; Mladen Milosavljević; Zeljko Karan; Stojko Vidović; Oliver Stojković; Bojana Panić; Andjelka Vucetić Dragović; Sandra Kovacević; Zlatko Jakovski; Chris Asplen; Dragan Primorac
Journal:  Croat Med J       Date:  2011-06       Impact factor: 1.351

6.  Quantifying mitochondrial DNA copy number using robust regression to interpret real time PCR results.

Authors:  Paulo Refinetti; David Warren; Stephan Morgenthaler; Per O Ekstrøm
Journal:  BMC Res Notes       Date:  2017-11-13

7.  Sex determination in skeletal remains from the medieval Eastern Adriatic coast - discriminant function analysis of humeri.

Authors:  Željana Bašić; Ivana Anterić; Katarina Vilović; Anja Petaros; Alan Bosnar; Tomislav Madžar; Ozren Polašek; Šimun Anđelinović
Journal:  Croat Med J       Date:  2013-06       Impact factor: 1.351

8.  DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification.

Authors:  Jennifer E L Templeton; Paul M Brotherton; Bastien Llamas; Julien Soubrier; Wolfgang Haak; Alan Cooper; Jeremy J Austin
Journal:  Investig Genet       Date:  2013-12-02

9.  Preamplification procedure for the analysis of ancient DNA samples.

Authors:  Stefania Del Gaudio; Alessandra Cirillo; Giovanni Di Bernardo; Umberto Galderisi; Theodoros Thanassoulas; Theodoros Pitsios; Marilena Cipollaro
Journal:  ScientificWorldJournal       Date:  2013-09-25

10.  Sex determination in highly fragmented human DNA by high-resolution melting (HRM) analysis.

Authors:  Brenda A Álvarez-Sandoval; Linda R Manzanilla; Rafael Montiel
Journal:  PLoS One       Date:  2014-08-06       Impact factor: 3.240

  10 in total

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